PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g059330.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 442aa    MW: 49645.1 Da    PI: 7.0947
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g059330.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.00013456123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C++C+k+F     L  H++ H
  Csa08g059330.1 34 YQCKYCPKRFVKTQALGGHQNAH 56
                    9****************999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.56E-63361No hitNo description
PROSITE profilePS5015711.9263461IPR007087Zinc finger, C2H2
PfamPF139121.5E-53459IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
SuperFamilySSF525401.91E-16322430IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MDPIDYEILS LDSTHVSDSS DDSSATEPLE GPKYQCKYCP KRFVKTQALG GHQNAHRKER  60
ELARKQNLAF QTQLEEPDLN MYVYSNWRPH SFPNQYALPP GFEEPRYNKD GRSDNLTMMC  120
NQYAGSSSSS FAGLKSDPSQ ETGQGNFFTD IPSQPQPQPP QPLLFASSPL CLDLCLGVGN  180
SQTQHEEPNG ATDEMIAERE NVAKDKKPST TVPPFSHFVP WPNEEDEFES PVEPSHQSQD  240
YDLELGFIIA NMVGLQYYPS RINGRERLWD LGLLVFFKLF KEVKHCAIFV VALLPSLDLY  300
SALPPHPGSS NTDGGDTKSS KDTLKAAGLT ILRLDETMTV KKRTQFIGEF GSPEFTRPVV  360
LLASIKASGA SINLTAASRV YFVRAVVDKI HRIGQKQDVK MIKMITRNDI EERVLELQQK  420
KKNLTNKAFK RKHTKDQRKR G*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g059330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157411316
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05120.17e-55C2H2 family protein