PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g060100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 373aa    MW: 40689.2 Da    PI: 8.3631
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g060100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.00044158180123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     y+C+ C+++F++   L  H  +H
  Csa08g060100.1 158 YQCKTCDRTFPSFQALGGHRASH 180
                     9***********99999998887 PP
2zf-C2H213.10.00029239261123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F++   L  H+r+H
  Csa08g060100.1 239 HECGICGAEFTSGQALGGHMRRH 261
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-12157182IPR007087Zinc finger, C2H2
SuperFamilySSF576672.8E-8157180No hitNo description
PROSITE profilePS5015710.471158185IPR007087Zinc finger, C2H2
SMARTSM003550.028158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
SuperFamilySSF576672.8E-8234261No hitNo description
Gene3DG3DSA:3.30.160.607.6E-4237263IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139122.4E-11238263IPR007087Zinc finger, C2H2
PROSITE profilePS501579.93239263IPR007087Zinc finger, C2H2
SMARTSM003550.047239261IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280241261IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MEAFEEATKE QSLILKGKRT KRQRTQSPIP FSIALPIVSS LAPDMEGESI DLDSKDNALG  60
NDQGNLKKDG VITSSSSSAS WSSQNNPTLK TAEDEEDQDI ANCLILLAQG HFLPHSNHHL  120
TNSNNNNNNN NNAYRFTSRK FLETSSSNGG GKAGYYVYQC KTCDRTFPSF QALGGHRASH  180
KKPKATSFYT NLDLKKNIYA NDAASLVTTT TVYNNNKNNN NNNRSLVVYG KASNYNKVHE  240
CGICGAEFTS GQALGGHMRR HRGAVVVTAA VAPTVTVATT AANTELSLSS MSFDQISDGQ  300
DHLVMPAKKK ARKTVVSLDL DLNLPAPEDE IRVNGFSLAS KQNHEQEHQQ KKLREEPKSL  360
VLSAPTLVDC HY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g060100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0038850.0BT003885.1 Arabidopsis thaliana clone RAFL15-10-C05 (R20610) putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankBT0050310.0BT005031.1 Arabidopsis thaliana clone U20610 putative zinc finger transcription factor (At5g04390) mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423586.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLQ84K310.0Q84K31_ARATH; C2H2-type zinc finger family protein
STRINGXP_010423586.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22312775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.10.0C2H2 family protein