PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa08g060680.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HD-ZIP

Protein Properties

Length: 198aa MW: 22818.7 Da PI: 8.9657

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa08g060680.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	53.3	4.8e-17	62	114	4	56
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eql +Le F+++ ++ +++ +L+++lgL+ rq vWFqNrRa++k Csa08g060680.1 62 NKRLTSEQLAALEVSFQEDIRLDSDRKLKLSRELGLQPRQTAVWFQNRRARWK 114 5679************************************************9 PP
2	HD-ZIP_I/II	112.1	3.7e-36	60	150	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +k +rl++eq+++LE sF+e+ +L+++rK +l+reLglqprq avWFqnrRAR+k k+lE+ y++L+++yda+ +en++L++ev++Lr+ + Csa08g060680.1 60 KKNKRLTSEQLAALEVSFQEDIRLDSDRKLKLSRELGLQPRQTAVWFQNRRARWKVKHLEESYDSLRQEYDAVWKENQMLHDEVKKLRAMI 150 589************************************************************************************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.31E-17	47	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.05	56	116	IPR001356	Homeobox domain
SMART	SM00389	3.7E-16	59	120	IPR001356	Homeobox domain
CDD	cd00086	2.12E-14	60	117	No hit	No description
Pfam	PF00046	1.7E-14	61	114	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.6E-18	62	124	IPR009057	Homeodomain-like
Pfam	PF02183	1.2E-7	118	149	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MPPPRLESNW LHSFNYDLSA GNSYTHAAVT QTGSVITVPE SEKMINTYHC DLSNNNEMIK 60 KNKRLTSEQL AALEVSFQED IRLDSDRKLK LSRELGLQPR QTAVWFQNRR ARWKVKHLEE 120 SYDSLRQEYD AVWKENQMLH DEVKKLRAMI LRDQGLMTNI NQIAEGGQTN GIGGYNNSPM 180 IVASSRWTRI SQPPNQW*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa08g060680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM214233	1e-138	KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds.
GenBank	KM214234	1e-138	KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010424789.1	1e-147	PREDICTED: putative homeobox-leucine zipper protein ATHB-51
Swissprot	Q9LZR0	3e-74	ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBL	A0A077B3F2	1e-109	A0A077B3F2_9BRAS; RCO-A
STRING	XP_010424789.1	1e-146	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1660	28	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03790.1	1e-76	homeobox 51

Publications ? help Back to Top
Andres RJ, et al. Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.). Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66 [PMID:27999177] Vuolo F, et al. LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication. Genes Dev., 2018. 32(21-22): p. 1361-1366 [PMID:30366902]