PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g060690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24135.3 Da    PI: 6.9138
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g060690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox43.46e-14731052456
                     S--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  24 ypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ e++ +LA++l+L+ rqV vWFqNrRa++k
  Csa08g060690.1  73 KLDSERKLKLARELDLEPRQVAVWFQNRRARWK 105
                     78999***************************9 PP
2HD-ZIP_I/II86.92.5e-28701342084
     HD-ZIP_I/II  20 eeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekev 84 
                     ++ kL++erK +lareL+l+prqvavWFqnrRAR+k k+lE+ y++L+++yda+ +e+++L++e 
  Csa08g060690.1  70 KDFKLDSERKLKLARELDLEPRQVAVWFQNRRARWKVKHLEESYDSLRQEYDAVWREKQMLHDER 134
                     3449*********************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.7E-848111IPR001356Homeobox domain
SuperFamilySSF466891.24E-1272118IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.7E-1472115IPR009057Homeodomain-like
PfamPF000462.4E-1173105IPR001356Homeobox domain
CDDcd000862.84E-1074108No hitNo description
PROSITE profilePS5007112.69875107IPR001356Homeobox domain
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MHGRSLTSLT RSAASAIILT ENFCDFFNLS CNLFYYTTED SSNKAAYTQT GPVISIPESE  60
KIINAYQCSK DFKLDSERKL KLARELDLEP RQVAVWFQNR RARWKVKHLE ESYDSLRQEY  120
DAVWREKQML HDERPLTSHN KLICDAGDET ENYNIKRSRF DDMMNINQIA EGALLLVVVA  180
DLGERTKKAC TIISKVQSDA IRESLKQIS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g060690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2142331e-56KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds.
GenBankKM2142341e-56KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006289347.22e-50putative homeobox-leucine zipper protein ATHB-51
RefseqXP_020879296.11e-50putative homeobox-leucine zipper protein ATHB-51
TrEMBLD7LWT81e-48D7LWT8_ARALL; Predicted protein
STRINGBostr.2128s0069.1.p5e-57(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-39homeobox 51