PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g060710.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 417aa    MW: 46723.4 Da    PI: 4.8793
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g060710.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07353408147
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHT....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmg....kgRtlkqcksrwqky 47 
                      r+ WT eE+e l+ +v+++  +      W++I ++      ++Rt+ ++k++w++ 
   Csa08g060710.1 353 RLFWTFEEEEMLKVGVEKFAAEakknmPWRKILEMGEkvfdETRTPADLKDKWRNM 408
                      678******************9**********99877*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-8347411IPR009057Homeodomain-like
PROSITE profilePS500907.805348409IPR017877Myb-like domain
SuperFamilySSF466891.33E-9351412IPR009057Homeodomain-like
SMARTSM007171.7E-4352411IPR001005SANT/Myb domain
CDDcd116602.95E-11356410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MKMRPKSILV RSSRKSPDPC PSLASPPEDE ANNGNLCSGV STTHCDTDDV EIVPDTFDER  60
DVPHKKRHCL GSTSETTDRG GVSVEPPVLN LEACIVCEVA DDHVSRCCGI DCLLSFHGAC  120
LYTDLGTSSE DLANPFCPYC WLKILALKSK TLKEKTVEAE KAVFRYLDKE VKSRVVNGFD  180
MSRGEKTPLI EENDQLDDDQ GEVGTDKVRD EVVGASEEEE RVAATTENFQ DAENDETAID  240
QTRVRTGAGQ KLDVVPFLST QQSFSGKEQG QVKQNEKRIR RRRIELNTID CEMSSKGSSD  300
QRNGEDEIEQ VTSSAQVTSP SGNMKNQQAT TIVVANSKTV RDISFFKKDQ RRRLFWTFEE  360
EEMLKVGVEK FAAEAKKNMP WRKILEMGEK VFDETRTPAD LKDKWRNMVK MNKTTL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g060710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006287565.20.0uncharacterized protein LOC17882878
TrEMBLR0HA350.0R0HA35_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010423662.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM76601327