PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa08g062350.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 545aa    MW: 61166.6 Da    PI: 7.1385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa08g062350.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-1875121148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEde l +av ++ g++Wk+Ia+ ++  Rt+ qc +rwqk+l
   Csa08g062350.2  75 KGGWTPEEDETLRQAVDKYKGKRWKKIAEFFP-DRTEVQCLHRWQKVL 121
                      688*****************************.************986 PP
2Myb_DNA-binding60.73.1e-19127173148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd+++v++v+++G+  W+ Ia+ ++ gR +kqc++rw+++l
   Csa08g062350.2 127 KGPWTKEEDDKIVELVNKYGPAKWSVIAKSLP-GRIGKQCRERWHNHL 173
                      79******************************.*************97 PP
3Myb_DNA-binding521.6e-16179222146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +++WT eE+  l +a++ +G++ W+ Ia+ ++ gRt++ +k++w++
   Csa08g062350.2 179 KDAWTVEEESALMNAHRVYGNK-WAEIAKVLP-GRTDNAIKNHWNS 222
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.14170121IPR017930Myb domain
SMARTSM007172.1E-1674123IPR001005SANT/Myb domain
PfamPF002491.2E-1675121IPR001005SANT/Myb domain
SuperFamilySSF466894.16E-1676131IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.2E-2177127IPR009057Homeodomain-like
CDDcd001672.17E-1478121No hitNo description
PROSITE profilePS5129431.167122177IPR017930Myb domain
SuperFamilySSF466894.87E-32124220IPR009057Homeodomain-like
SMARTSM007174.8E-18126175IPR001005SANT/Myb domain
PfamPF002492.8E-18127173IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-28128176IPR009057Homeodomain-like
CDDcd001671.76E-15129173No hitNo description
Gene3DG3DSA:1.10.10.601.5E-23177228IPR009057Homeodomain-like
SMARTSM007173.3E-16178226IPR001005SANT/Myb domain
PROSITE profilePS5129422.675178228IPR017930Myb domain
PfamPF002491.2E-14179222IPR001005SANT/Myb domain
CDDcd001676.99E-12181224No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSSSSIPAAC SPIKEEVSEM QIDIQCMENK QPLAAPCSSA SEGSGCFFLK SPEIATPATA  60
SPTPRRTSGP MRRAKGGWTP EEDETLRQAV DKYKGKRWKK IAEFFPDRTE VQCLHRWQKV  120
LNPELVKGPW TKEEDDKIVE LVNKYGPAKW SVIAKSLPGR IGKQCRERWH NHLNPDIKKD  180
AWTVEEESAL MNAHRVYGNK WAEIAKVLPG RTDNAIKNHW NSSLKKKLEF YLATGNLPPP  240
ATKFCLLNDN ADGDRDSKQS SATKPFKDSD SATQTSSGNT DSDEVGRDHF DASSALLEEL  300
AATRRISFNE YACSPVEYKP QLPNLEPIPE EVRINSKAYY ERSIQRKEEN VFGTPKHGNL  360
YYKSPLDYYF PSEADRQRMY RYECGCSPVA ESPVGLMTPP CNKDSGLAAT RSPESFLREA  420
ARTFPNTPSI FRKRRKVVLA AKTNDDVVSV GVKEAHQKEE SKDSSDISPA GREILMLETT  480
DDCRDDEKLE SNGNVFNVSP PYRLRAKRTA VIKSRQLEFT SAKEKQPDDE TETSELASEE  540
NKPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-70742285159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-70742285159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (By similarity). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). {ECO:0000250|UniProtKB:Q94FL9, ECO:0000269|PubMed:26069325}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00482DAPTransfer from AT5G02320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa08g062350.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by ethylene and salicylic acid (SA). {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196490.0AY519649.1 Arabidopsis thaliana MYB transcription factor (At5g02320) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010423876.10.0PREDICTED: uncharacterized protein LOC104708918
SwissprotQ6R0320.0MB3R5_ARATH; Transcription factor MYB3R-5
TrEMBLR0FDT20.0R0FDT2_9BRAS; Uncharacterized protein
STRINGXP_010423876.10.0(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.20.0myb domain protein 3r-5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]
  3. Chen P, et al.
    Arabidopsis R1R2R3-Myb proteins are essential for inhibiting cell division in response to DNA damage.
    Nat Commun, 2017. 8(1): p. 635
    [PMID:28935922]