PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g002470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ZF-HD
Protein Properties Length: 260aa    MW: 29558.9 Da    PI: 10.1888
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g002470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer93.42e-2964117458
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     ++Y+eC+kNhAas+Ggh+vDGC+Ef++  geegt  alkCaAC+CHRnFHR+ev 
  Csa09g002470.1  64 AKYRECQKNHAASTGGHVVDGCCEFLAG-GEEGTLGALKCAACNCHRNFHRKEVY 117
                     68*************************8.999********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR015667.6E-2665116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047708.8E-2865116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257743.0E-1665116IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.66166115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.1E-25184251IPR009057Homeodomain-like
SuperFamilySSF466893.59E-17185251IPR009057Homeodomain-like
PROSITE profilePS500719.021188252IPR001356Homeobox domain
TIGRFAMsTIGR015652.4E-25190247IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MELGGKGNAI TSTTMISTNT IEVKAHTKPF PDPEAKPESA DPSIALFPIK KETQKSRTRV  60
DQPAKYRECQ KNHAASTGGH VVDGCCEFLA GGEEGTLGAL KCAACNCHRN FHRKEVYGHK  120
QDQMMITPAF YSSNSSYKAM QPRVMHPTGE IGRRTSSSSE DMKKILSHHN QNVDGRCLMM  180
MMTTTTRKKK KRVRTKINEE QKEKMKEFAE RLGWRMQKKD EEEIDKFCKV VNLRRQVFKV  240
WMHNNKQAMK RNSNTTSEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-181912481875ZF-HD homeobox family protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1186191RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g002470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424889.10.0PREDICTED: zinc-finger homeodomain protein 7-like
SwissprotQ9SVL01e-146ZHD7_ARATH; Zinc-finger homeodomain protein 7
TrEMBLA0A178VL561e-143A0A178VL56_ARATH; ZHD7
STRINGXP_010424889.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138541525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50890.11e-127homeobox protein 28