PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g002790.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GRAS
Protein Properties Length: 606aa    MW: 65964.6 Da    PI: 5.4441
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g002790.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS440.51.2e-1342406001374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfs 94 
                     lv++L++cAeav++++l+ a+al++++  la +++ +m+++a+yf+eALa+r++r        l pp+++ +++ s++l++   f+e++P+lkf+
  Csa09g002790.1 240 LVHALMACAEAVQQNNLTIAEALVKQIGCLAVSQAGAMRKVATYFAEALARRIYR--------LsPPQNQIDHSLSDTLQM--HFYETCPYLKFA 324
                     689****************************************************........414444444445555444..4*********** PP

            GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledl 189
                     h+taNqaIlea++g++rvH+iDf+++qGlQWpaL+qaLa R++gpp +R+Tg+g+p+++++++l+e+g +La++Ae+++v+fe++ +va++l+dl
  Csa09g002790.1 325 HFTANQAILEAFQGKKRVHVIDFSMNQGLQWPALMQALALREGGPPIFRLTGIGPPAPDNSDQLHEVGCKLAQLAEAIHVEFEYRGFVANSLADL 419
                     *********************************************************************************************** PP

            GRAS 190 eleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                     + ++L+++p   E++aVn+v++lh+ll +++ +e+    vL +vk+++P +++vveqe++hn++ Fl+rf+e+l+yys+lfdsle      s+++
  Csa09g002790.1 420 DASMLELRPseIESVAVNSVFELHKLLGRPGGIEK----VLGVVKQIKPVIFTVVEQESNHNGPVFLDRFTESLHYYSTLFDSLEGV---PSSQD 507
                     ********98889******************9999....*********************************************998...69999 PP

            GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +++++++lg++i+n+vaceg +r+erhetl++W  r++++GF p++l+++a kqa++ll+ ++ ++gyrvee++g+l+lgW++rpL+++SaW+
  Csa09g002790.1 508 KVMSEVYLGKQICNLVACEGPDRVERHETLSQWGIRFGSSGFAPAHLGSNAFKQASMLLSVFNsGQGYRVEENNGCLMLGWHTRPLITTSAWK 600
                     ********************************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011294.2E-4047120No hitNo description
PfamPF120413.7E-3447114IPR021914Transcriptional factor DELLA, N-terminal
PROSITE profilePS5098565.512214579IPR005202Transcription factor GRAS
PfamPF035144.0E-132240600IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0010187Biological Processnegative regulation of seed germination
GO:0010218Biological Processresponse to far red light
GO:0042176Biological Processregulation of protein catabolic process
GO:0042538Biological Processhyperosmotic salinity response
GO:2000033Biological Processregulation of seed dormancy process
GO:2000377Biological Processregulation of reactive oxygen species metabolic process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MKRDLHQYQG RLPNNHGTSS SSSSSSLPVS KDKMMMVKEE EDGGNMDELL AVLGYKVRSS  60
EMAEVALKLE QLETMMGNVQ EDGLSQLGTD TVHYNPSELY SWLDNMLTEL NPPPGASDPI  120
LTSPEIVINN NNNNNSFLTA AGGDSSTIVP ASDYDLKVIP GNAIYQPRSQ FAIDSSSNQN  180
KRLKSCSSPD SMVTSTSTAT QIGGVIGTTV MTTTTTTTTA AAESTRSVIL VDSQDNGVRL  240
VHALMACAEA VQQNNLTIAE ALVKQIGCLA VSQAGAMRKV ATYFAEALAR RIYRLSPPQN  300
QIDHSLSDTL QMHFYETCPY LKFAHFTANQ AILEAFQGKK RVHVIDFSMN QGLQWPALMQ  360
ALALREGGPP IFRLTGIGPP APDNSDQLHE VGCKLAQLAE AIHVEFEYRG FVANSLADLD  420
ASMLELRPSE IESVAVNSVF ELHKLLGRPG GIEKVLGVVK QIKPVIFTVV EQESNHNGPV  480
FLDRFTESLH YYSTLFDSLE GVPSSQDKVM SEVYLGKQIC NLVACEGPDR VERHETLSQW  540
GIRFGSSGFA PAHLGSNAFK QASMLLSVFN SGQGYRVEEN NGCLMLGWHT RPLITTSAWK  600
LSAAH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-6124759925377Protein SCARECROW
5b3h_D2e-6124759925377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00611ChIP-seqTransfer from AT2G01570Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g002790.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546040.0AC254604.1 Capsella rubella clone CAP23-D18, complete sequence.
GenBankAC2546070.0AC254607.1 Capsella rubella clone CAP08-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424927.10.0PREDICTED: DELLA protein RGA-like
SwissprotQ5BN220.0RGA2_BRACM; DELLA protein RGA2
TrEMBLE4MVL70.0E4MVL7_EUTHA; mRNA, clone: RTFL01-02-P11
TrEMBLV4KPE30.0V4KPE3_EUTSA; Uncharacterized protein
STRINGXP_010424927.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein