PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g004350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family G2-like
Protein Properties Length: 279aa    MW: 30757 Da    PI: 7.0349
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g004350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.61.2e-323790255
         G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                    prlrWtp+LH++Fv+ave LGG+ +AtPk +l++m+vkgLt++hvkSHLQ+YR 
  Csa09g004350.1 37 PRLRWTPDLHRCFVNAVEMLGGQYRATPKLVLKMMDVKGLTISHVKSHLQMYRG 90
                    8****************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.5E-303390IPR009057Homeodomain-like
PROSITE profilePS5129411.4853393IPR017930Myb domain
TIGRFAMsTIGR015574.5E-233789IPR006447Myb domain, plants
SuperFamilySSF466898.06E-153789IPR009057Homeodomain-like
PfamPF002493.8E-93889IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRCGGRNGN GNVTGVGFKG NGGGGGGVRP YVRSPVPRLR WTPDLHRCFV NAVEMLGGQY  60
RATPKLVLKM MDVKGLTISH VKSHLQMYRG SRLTLGKPEE ESSSSSSIRR RRRRQDSEED  120
HLSLHSRNDC LLGFHSFPLS SHSPSLLPLS SRGGGGRRRA EQTTSDSGYH DVDDHDFLPI  180
FNKTTDTTTF PSHHLLPKET EEWRDQEQEQ EEGEEEEEDL SLSLSLNHHH QWRSNGSTVS  240
ETSEAAVSTC SAPFISKDCF GSSKIDLNLN LSISLLGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A9e-193892357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B9e-193892357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C9e-193892357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D9e-193892357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108113RRRRRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g004350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010424971.10.0PREDICTED: putative Myb family transcription factor At1g14600 isoform X1
SwissprotQ700D92e-68MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A078F8F81e-113A0A078F8F8_BRANA; BnaA02g26180D protein
TrEMBLA0A398AHD61e-113A0A398AHD6_BRACM; Uncharacterized protein
TrEMBLM4ECV81e-113M4ECV8_BRARP; Uncharacterized protein
STRINGXP_010424971.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46941852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.16e-61G2-like family protein