PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g005670.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 518aa    MW: 56513.2 Da    PI: 7.7643
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g005670.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1062e-33256312259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgs+fprsYY+Ct++ Cpvkkkvers  d++v+ei+Y+g+H he
  Csa09g005670.1 256 DDGYNWRKYGQKQVKGSDFPRSYYKCTHPACPVKKKVERSL-DGQVTEIIYKGQHSHE 312
                     8****************************************.***************7 PP
2WRKY105.13.6e-33420478159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++ C v+k+ver+a+dpk+v++tYeg+Hnh+
  Csa09g005670.1 420 LDDGYRWRKYGQKVVKGNPYPRSYYKCTTPACGVRKHVERAANDPKAVVTTYEGKHNHD 478
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-29246314IPR003657WRKY domain
PROSITE profilePS5081123.95250314IPR003657WRKY domain
SuperFamilySSF1182901.19E-25253314IPR003657WRKY domain
SMARTSM007744.1E-36255313IPR003657WRKY domain
PfamPF031061.6E-25256311IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.8E-36405480IPR003657WRKY domain
SuperFamilySSF1182903.01E-29412480IPR003657WRKY domain
PROSITE profilePS5081137.39415480IPR003657WRKY domain
SMARTSM007746.9E-38420479IPR003657WRKY domain
PfamPF031061.6E-25421478IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 518 aa     Download sequence    Send to blast
MAENKEDQEQ QPSKLLKPST GRPTISLPPR PFGEMFFSGG VGFSPGPMTL VSNLFSDPDE  60
LKSFSQLLAG AMASPAAAAV AAAAVVATAH HQTPVSSVGD GGGGSGGDDV DPRFKQNRPT  120
GLMITQPPGM FTVPPGLSPA TLLDSPSFFG LFSPLQGAFG MTHQQALAQV TAQAVQGNNN  180
VHMQQSQQSE YPSSTLQQQQ QQQQQASLIE IPTFSTEHRS QIPAPVQDSS QGQRETSDIS  240
VSEHRSQPQN ADKPADDGYN WRKYGQKQVK GSDFPRSYYK CTHPACPVKK KVERSLDGQV  300
TEIIYKGQHS HEVPQKRGNN NGSSKNSDVA TQFRTSNSSL NKTKRDQETS QVTTTEQTSE  360
ASDGEEVGNA ETSVGEKHED EPDPKRRNTE VRVSEPVASS HKTVTEPRII VQTTSEVDLL  420
DDGYRWRKYG QKVVKGNPYP RSYYKCTTPA CGVRKHVERA ANDPKAVVTT YEGKHNHDVP  480
AARTSSHQLR PNNQHNNSTG NYNQQQPVAR LRLKEEL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A6e-44256481878Probable WRKY transcription factor 4
2lex_A6e-44256481878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g005670.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF2247010.0AF224701.1 Arabidopsis thaliana WRKY DNA-binding protein 3 (WRKY3) mRNA, complete cds.
GenBankAK2290360.0AK229036.1 Arabidopsis thaliana mRNA for putative WRKY DNA-binding protein, complete cds, clone: RAFL16-33-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425121.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ700.0WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLR0H3G80.0R0H3G8_9BRAS; Uncharacterized protein
STRINGXP_010425121.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15342792
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.10.0WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]