PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g008560.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 155aa    MW: 17318.4 Da    PI: 5.0347
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g008560.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.21.2e-09742843
                    HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    +r v  skRr++++ KA  L+ L +a++av + s++
  Csa09g008560.1  7 QRAVACSKRRQTLFSKAADLCHLSGANIAVFVTSPS 42
                    6899*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.9E-4151IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.746142IPR002100Transcription factor, MADS-box
CDDcd002661.45E-15372No hitNo description
SuperFamilySSF554553.4E-12680IPR002100Transcription factor, MADS-box
PfamPF003192.3E-9745IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MKEIRPQRAV ACSKRRQTLF SKAADLCHLS GANIAVFVTS PSEISDVVYS FSGYSPAQEI  60
ADCYLNRKPP PKIDVKSQST KLGFWWEDPD LYNSCDDLSE LNILEDRVER VKKHVLACLE  120
KKEKSQSVVS NTEQNPITDE DCDRGFDLNS SPST*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g008560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085726.11e-108PREDICTED: agamous-like MADS-box protein AGL97
TrEMBLR0HBN46e-73R0HBN4_9BRAS; Uncharacterized protein
STRINGXP_010425202.11e-100(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63951442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27130.13e-73AGAMOUS-like 39