PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g009100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 343aa    MW: 37590 Da    PI: 4.7888
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g009100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.97e-15126174153
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                     s+  GVr++k +g+W+AeIr+p     + +r +lg++ t e+Aa a+ a ++++
  Csa09g009100.1 126 SKPVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTYETLEQAASAYAAKKLEF 174
                     7899*****9.**********72....36******************9988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.4E-9126174IPR001471AP2/ERF domain
CDDcd000181.98E-19126172No hitNo description
SMARTSM003803.3E-13127181IPR001471AP2/ERF domain
PROSITE profilePS5103218.136127184IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-14127174IPR016177DNA-binding domain
PRINTSPR003671.7E-6128139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-19130177IPR001471AP2/ERF domain
PRINTSPR003671.7E-6150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MAERKKRSSV QTNKPYKKPM KKKSLQLNHL PGLSEDLKTM RKIRFVVNDP YATDYSSSEE  60
DERAQRRKRY VCEIDLPFAQ ASATQAESQN SFCQESTNNN NGVSRTKTKT SACSKKVLSS  120
KPTSVSKPVG VRQRKWGKWA AEIRHPITKT RTWLGTYETL EQAASAYAAK KLEFDALAAA  180
TSAASSNNVS ENALSDSNMS GSLISATGSN VEAVSSNNLD KKLLDSTIDQ EAGESKKASF  240
GFDFADLQIP EMGCFIDESL IPNVCELDFL LTEENNQLLD DYCGIDDLDI IGLECDGPSE  300
LPDYDFSDVD IDLGLIGTTI DKFGFVDHIA TTTTTPLNIA CP*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g009100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425249.10.0PREDICTED: ethylene-responsive transcription factor ERF119-like
SwissprotQ9LUA21e-175EF119_ARATH; Ethylene-responsive transcription factor ERF119
TrEMBLR0FQB40.0R0FQB4_9BRAS; Uncharacterized protein
STRINGXP_010425249.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25890.21e-175ERF family protein