PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g011240.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 121aa MW: 13449.5 Da PI: 8.2034

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g011240.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	133.8	6.7e-42	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C+kdC++apyfp ++p+kfa++h+++Ga nv+k+l++lpe++r +a++sl++eA++r++dPvyG+vg+i+ lq q++++++ela Csa09g011240.1 5 RCAACKYLRRRCPKDCIFAPYFPPNDPAKFACIHRIYGAGNVSKMLQQLPEQTRAEAVESLCFEAKCRVDDPVYGCVGIIHLLQTQIQNAQNELA 99 6********************************************************************************************** PP DUF260 96 llkee 100 ++++e Csa09g011240.1 100 KTQAE 104 *9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.783	4	105	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-41	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MNPKRCAACK YLRRRCPKDC IFAPYFPPND PAKFACIHRI YGAGNVSKML QQLPEQTRAE 60 AVESLCFEAK CRVDDPVYGC VGIIHLLQTQ IQNAQNELAK TQAEVAVAQT NLSQTQNSDF 120 *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-37	6	105	12	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-37	6	105	12	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g011240.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473846	1e-150	AB473846.1 Arabidopsis thaliana ASL13 mRNA for ASYMMETRIC LEAVES2-like 13 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010425379.1	1e-85	PREDICTED: LOB domain-containing protein 24-like
Swissprot	P59468	9e-82	LBD24_ARATH; LOB domain-containing protein 24
TrEMBL	R0FT52	6e-80	R0FT52_9BRAS; Uncharacterized protein
STRING	XP_010425379.1	4e-85	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26660.1	4e-84	LOB domain-containing protein 24