PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g022890.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 328aa    MW: 36608.6 Da    PI: 8.5973
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g022890.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00062828323
                    ETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                    C +Cgk F +      H+r+H
  Csa09g022890.1  8 CRICGKKFETLKGVYGHQRMH 28
                    *******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.45628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.159633IPR007087Zinc finger, C2H2
SuperFamilySSF576676.53E-9628No hitNo description
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576676.53E-9133160No hitNo description
PfamPF139127.4E-7138162IPR007087Zinc finger, C2H2
SMARTSM003550.4138160IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.699138165IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.4E-4138160IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280140160IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995305327IPR007087Zinc finger, C2H2
SMARTSM00355100305327IPR015880Zinc finger, C2H2-like
PfamPF139120.069308325IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MSQNLHLCRI CGKKFETLKG VYGHQRMHSS KINRIEDDNG LGKIWGFKKS RVCSVSSFSA  60
KETEAFDLFG IGSTFPMTEI EKQEVREAAL SLVMLSQRVY DFASIRILPL GGGDDFMDLE  120
MKPCPLRSKL QKKTHSGYKC GTCDKSFGCY QALGGHQRLH RSIEGKLAHK REYTEDDNSL  180
SDSSEAKKIV TQPSSFEVFQ EEKNLQCVEP QLEFHELLAP SGFDKSSTCS MTRSSALPSP  240
PEARKIVSHP SSFGVSQEKI LHCVESKQDF SELLYHSGFD KSTSCSKTRF SALHSPLRSK  300
PHSSYRFKIC GKSFVCSQAL GGHQTLH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g022890.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0013094e-33AP001309.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MUO10.
GenBankCP0026864e-33CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085439.10.0PREDICTED: LOW QUALITY PROTEIN: putative uncharacterized zinc finger protein 814
TrEMBLR0H2121e-151R0H212_9BRAS; Uncharacterized protein
STRINGXP_010430874.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.11e-129C2H2 family protein