PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g022900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 386aa    MW: 43193.6 Da    PI: 7.4363
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g022900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014260276117
                     EEETTTTEEESSHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLk 17 
                     y C++Cg+sF r+ +L+
  Csa09g022900.1 260 YDCNICGESFVRSISLN 276
                     88**********98886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.56E-65683No hitNo description
PROSITE profilePS5015711.1985986IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.2E-45981IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.175981IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-95983IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035514156178IPR015880Zinc finger, C2H2-like
PfamPF139120.024156178IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MSLLKEHEME EAAMSLVMLS ERVSDFDLPP GDDDSMDFDK LIPIQEKSLG CVESSNSSHK  60
CNVCGKSFGC YQALGGHKRL HRSIKGKLEC KKENAKADSS LFFGSSEDKK IVSIPSKFEV  120
FQEEKILDCV ESRKDFRELL PLDCKFQKRP ESSSSYRCKV CDKSSECLKV LGGHKGHHSL  180
LERKKKYTVG DNKSLSYSSE AKKTVSKPSS FEVSHEKVLH CVELKQDFSE LLSYSSSCSQ  240
TSFSTLRSEL QKNTKSKSSY DCNICGESFV RSISLNSLQV SQEKILHCVE SKQDFSVLLS  300
HPGFDKSSSL RSKSQSSIST KGQLACKNEK SEDGNSLFGS DSEAKKIFTQ PLSFEVSQEK  360
ILHFVESKQD FSELFYHSGF DNFSN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g022900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514648.11e-167PREDICTED: LOW QUALITY PROTEIN: zinc finger protein 571-like
TrEMBLR0HN181e-126R0HN18_9BRAS; Uncharacterized protein
STRINGXP_010430874.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15545814
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29340.16e-40C2H2 family protein