PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g025270.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 245aa    MW: 27820.2 Da    PI: 10.4409
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g025270.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.2e-291058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    rienk++rqvtfskRr+g+ KKA+E+SvLCda+va+i+fs++gkl+eys
  Csa09g025270.1 10 RIENKIRRQVTFSKRRTGLVKKAQEISVLCDADVALIVFSPKGKLFEYS 58
                    8***********************************************8 PP
2K-box80.63.8e-27891721598
           K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                      ++++e ++L + i+ +qr+ Rhl+Ge+++ Ls++eLq Le qL+++lkk Rs+Kn+l+le+i +lqkkekel+e +k+L+kk 
  Csa09g025270.1  89 GECSTECSRLLRMIDVMQRSVRHLKGEEVDALSIRELQGLEMQLDTALKKTRSRKNQLMLESIAQLQKKEKELKELKKQLTKKA 172
                     57899****************************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.3E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.6161IPR002100Transcription factor, MADS-box
SuperFamilySSF554555.23E-31284IPR002100Transcription factor, MADS-box
CDDcd002658.87E-39278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.4E-2287171IPR002487Transcription factor, K-box
PROSITE profilePS5129714.30888178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MGRGRVQLRR IENKIRRQVT FSKRRTGLVK KAQEISVLCD ADVALIVFSP KGKLFEYSAG  60
SSMERILDRY ERSSYAGQEI PTPNLDSQGE CSTECSRLLR MIDVMQRSVR HLKGEEVDAL  120
SIRELQGLEM QLDTALKKTR SRKNQLMLES IAQLQKKEKE LKELKKQLTK KASQRDDFEP  180
QNLRHGLATP LCAPPQALPR PLSPPPSSFG DTLLRNGVEE VAAETLIRKT NTTLPHWMPR  240
LTRE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-19170169MEF2C
5f28_B4e-19170169MEF2C
5f28_C4e-19170169MEF2C
5f28_D4e-19170169MEF2C
6byy_A5e-19174173MEF2 CHIMERA
6byy_B5e-19174173MEF2 CHIMERA
6byy_C5e-19174173MEF2 CHIMERA
6byy_D5e-19174173MEF2 CHIMERA
6bz1_A5e-19174173MEF2 CHIMERA
6bz1_B5e-19174173MEF2 CHIMERA
6bz1_C5e-19174173MEF2 CHIMERA
6bz1_D5e-19174173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g025270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1412380.0AY141238.1 Arabidopsis thaliana MADS-box protein AGL79 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425772.11e-179PREDICTED: truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S76e-78AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLR0FS021e-139R0FS02_9BRAS; Uncharacterized protein
STRINGXP_010425772.11e-179(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM130331525
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30260.11e-123AGAMOUS-like 79
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]