PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g034210.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 244aa    MW: 27368.8 Da    PI: 9.575
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g034210.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM131.46.7e-4161362128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      +GfrF Pt+eel+++yL+ +++g + ++++ i+ +d+++veP +Lp+    +++++ ++w fF++r++++a+g r++r+t+sgyWkatg+  +v
  Csa09g034210.1   6 RVGFRFYPTEEELLTFYLRIQLSGGNATIHSLIPILDVFSVEPTQLPNlageRCRGDAEQWLFFVPRQEREARGGRPSRTTRSGYWKATGSPGPV 100
                     68***************************999**************9656766667888************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     +s +++++g+kkt+vfy+g+ap+g+kt+W m+ey++
  Csa09g034210.1 101 FSPDNRVIGVKKTMVFYTGKAPTGRKTKWKMNEYKA 136
                     **********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.14E-444161IPR003441NAC domain
PROSITE profilePS5100546.8555161IPR003441NAC domain
PfamPF023651.4E-207135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MGEELRVGFR FYPTEEELLT FYLRIQLSGG NATIHSLIPI LDVFSVEPTQ LPNLAGERCR  60
GDAEQWLFFV PRQEREARGG RPSRTTRSGY WKATGSPGPV FSPDNRVIGV KKTMVFYTGK  120
APTGRKTKWK MNEYKAVDET ASASTNPKLR NEFSICRIYI KSGSSRAFDR RPTEAYGIER  180
KVPSNRVETS SRVTISTSPE TSHSGGNNVD LPVNATTINT QSISEMVDGL SLPFWEWEQM  240
TWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-33816620170NO APICAL MERISTEM PROTEIN
1ut4_B5e-33816620170NO APICAL MERISTEM PROTEIN
1ut7_A5e-33816620170NO APICAL MERISTEM PROTEIN
1ut7_B5e-33816620170NO APICAL MERISTEM PROTEIN
3swm_A6e-33816623173NAC domain-containing protein 19
3swm_B6e-33816623173NAC domain-containing protein 19
3swm_C6e-33816623173NAC domain-containing protein 19
3swm_D6e-33816623173NAC domain-containing protein 19
3swp_A6e-33816623173NAC domain-containing protein 19
3swp_B6e-33816623173NAC domain-containing protein 19
3swp_C6e-33816623173NAC domain-containing protein 19
3swp_D6e-33816623173NAC domain-containing protein 19
4dul_A5e-33816620170NAC domain-containing protein 19
4dul_B5e-33816620170NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g034210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL1386411e-108AL138641.2 Arabidopsis thaliana DNA chromosome 3, BAC clone T22K7.
GenBankCP0026861e-108CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010425854.11e-180PREDICTED: putative NAC domain-containing protein 61
SwissprotQ9M2901e-147NAC61_ARATH; Putative NAC domain-containing protein 61
TrEMBLB3H5061e-157B3H506_ARATH; NAC domain containing protein 61
STRINGXP_010425854.11e-180(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14452893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44350.21e-152NAC domain containing protein 61