PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g039380.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

TCP

Protein Properties

Length: 196aa MW: 21923.4 Da PI: 5.5088

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g039380.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	93.3	4.8e-29	14	167	5	115
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...................ssssaseceaessss 80 +++ +++h kvggRdRR+Rl+ ++a ++F L+deLGf +d++t++WLl++a+pai ++tg Csa09g039380.1 14 TKTPKDRHLKVGGRDRRIRLPPSVAPQLFNLTDELGFQTDGQTVDWLLRNAEPAIFAATGHgisttpndvihssynnfhnY-------------- 94 56789********************************************************66333333322222222220.............. PP TCP 81 sasnsssg.............................................kaaksaakskksqksaasalnlakesr 115 + +++++ k k++ ++ + l+++++ Csa09g039380.1 95 -------DfncgnnctingnntingtidgdkltgvntvhhemvfpvgtmkehaASSTFPVKDKEDVSDMSMLPPLMHHQQ 167 .......1223333444444445566666667777777777777777777433223333333333333333333333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.4E-24	17	123	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	24.965	17	71	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MDSRKEMNNM EKATKTPKDR HLKVGGRDRR IRLPPSVAPQ LFNLTDELGF QTDGQTVDWL 60 LRNAEPAIFA ATGHGISTTP NDVIHSSYNN FHNYDFNCGN NCTINGNNTI NGTIDGDKLT 120 GVNTVHHEMV FPVGTMKEHA ASSTFPVKDK EDVSDMSMLP PLMHHQQQQE QEPQPQFELG 180 KVEMAADEKI YVWSE*

Functional Description ? help Back to Top
Source	Description
UniProt	Required during early processes in pollen development. {ECO:0000269\|PubMed:16786299}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00390	DAP	Transfer from AT3G45150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g039380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010431004.1	1e-147	PREDICTED: transcription factor TCP16-like
Swissprot	Q9M1U4	4e-52	TCP16_ARATH; Transcription factor TCP16
TrEMBL	D7LNL8	4e-66	D7LNL8_ARALL; Uncharacterized protein
STRING	XP_010431004.1	1e-147	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15750	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G45150.1	1e-52	TCP domain protein 16

Publications ? help Back to Top
Uberti-Manassero NG,Coscueta ER,Gonzalez DH Expression of a repressor form of the Arabidopsis thaliana transcription factor TCP16 induces the formation of ectopic meristems. Plant Physiol. Biochem., 2016. 108: p. 57-62 [PMID:27404135]