PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g041070.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 176aa    MW: 20096.9 Da    PI: 8.2355
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g041070.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-0878106129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      rg+WT  Ed++l ++++ +G g W+t ++
   Csa09g041070.1  78 RGAWTDHEDKILREYITTHGEGKWSTLPN 106
                      89***********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-1072107IPR009057Homeodomain-like
PROSITE profilePS500906.7673104IPR017877Myb-like domain
SuperFamilySSF466891.72E-674107IPR009057Homeodomain-like
CDDcd001670.0071680102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
CRFGLVCYTD GLRINLQRLV VKRLPYGHCN NSPIKITQLN TKTVSVHNTK LKTICSHHNH  60
ERMRKRATNT LKRAELNRGA WTDHEDKILR EYITTHGEGK WSTLPNQAVE EGEIDVHGEA  120
KAKPDREDGV VELELDPGVN EDKKELLHEF DVVETQKSYK KEMVILITKT CGLWG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g041070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0154776e-40AB015477.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MOK9.
GenBankAF3719816e-40AF371981.2 Arabidopsis thaliana putative transcription factor MYB123 (MYB123) mRNA, complete cds.
GenBankAJ2994526e-40AJ299452.1 Arabidopsis thaliana TT2 gene for transparent testa 2 protein, exons 1-3.
GenBankCP0026886e-40CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-22MYB family protein