PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g041170.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 383aa    MW: 42051.3 Da    PI: 10.3652
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g041170.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.50.0004585107123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+Cg  F+    L  H+r+H
  Csa09g041170.1  85 HPCPICGVNFPMGQALGGHMRRH 107
                     78********************9 PP
2zf-C2H211.80.00072295317123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + Cp+Cg  F+    L  H+r+H
  Csa09g041170.1 295 HICPICGLDFPMGQALGGHMRKH 317
                     68********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.33E-634107No hitNo description
PfamPF139124.4E-113560IPR007087Zinc finger, C2H2
PROSITE profilePS501578.9543658IPR007087Zinc finger, C2H2
SMARTSM003551.13658IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002803858IPR007087Zinc finger, C2H2
PfamPF139123.9E-1085108IPR007087Zinc finger, C2H2
SMARTSM003550.2585107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.76285112IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SuperFamilySSF576673.08E-7242317No hitNo description
PfamPF139124.7E-11243268IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432244271IPR007087Zinc finger, C2H2
SMARTSM003550.33244266IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280246266IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.492295322IPR007087Zinc finger, C2H2
PfamPF139121.1E-9295318IPR007087Zinc finger, C2H2
SMARTSM003550.16295317IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280297317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MVARSEEIEK VNDTAARCLM LLPRVGEYGG GEKRVFRCKT CLKEFSTFQA LGGHRASHKK  60
LINSDDPSLL GSLSNKKTRA AMTSHPCPIC GVNFPMGQAL GGHMRRHRNE KASGTTLVTR  120
SFLPEATTVT TLKKCSSGKR VACLDLDLDS MESLVNWKLE LVYPRNTHET HKLNTTPTLE  180
RKQKKKKNPR RASLNSIQDF ETMVANRENL DPTMDKAAAN CLMLLSRVGG GGGEGTALKE  240
KRVFRCKTCK REFSSFQALG GHRASHNKPT NNGDYTSIPG SPKKKPPTKT TTTIHICPIC  300
GLDFPMGQAL GGHMRKHRNE KEKASNNELV TRSFLPENAT LTTTTLKKSS SSGKRVACLD  360
FADLAAVDTL VNTNLELGRT MY*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g041170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085706.11e-114PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX855e-93ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLA0A178V7P05e-84A0A178V7P0_ARATH; Uncharacterized protein
STRINGXP_010426036.11e-114(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.12e-95C2H2 family protein