PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g048300.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 252aa MW: 27830.3 Da PI: 6.532

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g048300.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.5e-10	144	190	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+s+q Csa09g048300.1 144 HSLAERARREKISERMKFLQDLIPGC----NKIIGKALVLDEIINYIQSMQ 190 999*********************....999**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-16	137	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.80E-9	137	194	No hit	No description
PROSITE profile	PS50888	14.894	139	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.2E-16	140	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-7	144	190	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.5E-8	145	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MSEPELLMDP PVVNESSFSE VWPFSVNYGI QLPINSGQDF TSRSELFGYS GNSYMSAAEE 60 STVTELTGGG RKRRPLTSVT RLKESRKKKM KVCGPCGSDG ETEYGWRAEG ETNSGGGSKE 120 TEEKSPAKGY IHVRARRGQA TDRHSLAERA RREKISERMK FLQDLIPGCN KIIGKALVLD 180 EIINYIQSMQ RQVEFLSMKL EIVNSDVSSG PEVGMFTSGD LNTLPIEVHR TLFDQQEADK 240 ALGSHNRTGS I*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	71	88	KRRPLTSVTRLKESRKKK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g048300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010426245.1	0.0	PREDICTED: transcription factor bHLH79-like
Swissprot	Q9LV17	5e-91	BH079_ARATH; Transcription factor bHLH79
TrEMBL	R0HHA9	1e-138	R0HHA9_9BRAS; Uncharacterized protein
STRING	XP_010426245.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1855	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	2e-93	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]