PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g048360.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family LBD
Protein Properties Length: 361aa    MW: 40561.1 Da    PI: 4.8097
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g048360.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.44.9e-38361351100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     aCaaCk++rr+Ca+dC+lapyfpaeqpk f+nvh+lFG++ ++k+l++l+e++r++am+s+++++ +r r Pv+G++gv ++lq  +  +++el+
  Csa09g048360.1  36 ACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILERLDETQRPEAMKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWLAEEELK 130
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     +++++
  Csa09g048360.1 131 AVNAQ 135
                     99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.16235136IPR004883Lateral organ boundaries, LOB
PfamPF031957.5E-3536133IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009556Biological Processmicrosporogenesis
GO:0009786Biological Processregulation of asymmetric cell division
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MSHVKHIHKG SLERFLDLLL IALVVLMTLK GGTSGACAAC KYQRRRCAAD CPLAPYFPAE  60
QPKLFQNVHR LFGVRSIVKI LERLDETQRP EAMKSIIFQS YVRDRSPVHG CLGVTQQLQY  120
MIWLAEEELK AVNAQLQLYR SQNDGQNQQN HNQMMINELG VGVDNKQQQD DVTSQLDLGM  180
GLNVNNNQSN VVAPFFSPLP VSETQQPQMS YTYSCSEVNN NGYSPPAYNT DSGKEIMTNN  240
NNVWGVHNRF LYNDNNGGGF NNQNESCHEM KSNNGVMGIQ SQLVNLQMAS NHQQQEDEDD  300
PHEYDEIHQF LEIIDDRQSF ADSKEAYASS SGETLKEQID EIGENELRSA ATCFSLTSVN  360
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-24321397114LOB family transfactor Ramosa2.1
5ly0_B5e-24321397114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g048360.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426255.10.0PREDICTED: LOB domain-containing protein 27-like
SwissprotQ9STS61e-172LBD27_ARATH; LOB domain-containing protein 27
TrEMBLR0HMD70.0R0HMD7_9BRAS; Uncharacterized protein
STRINGXP_010426255.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63032746
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47870.11e-169LOB domain-containing protein 27
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]