PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g048440.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 246aa    MW: 27468.8 Da    PI: 5.1916
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g048440.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF25.91.3e-0823611350
                    HHHHHHHHHHHHHHHHHHHT-EEEEEEE-T.TSEEEEEE CS
          SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifss.tgklyeys 50
                    f kR  g  KKA ELSvLC+  v  + + + +++l+ ++
  Csa09g048440.1 23 FKKRFPGFKKKAIELSVLCGNSVGFVCYTPdDNNLHIWP 61
                    899********************9888876257888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554553.66E-111896IPR002100Transcription factor, MADS-box
PROSITE profilePS500669.2361951IPR002100Transcription factor, MADS-box
PfamPF003192.2E-82157IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MAPRSKSCVD DDNDLKMMKK KVFKKRFPGF KKKAIELSVL CGNSVGFVCY TPDDNNLHIW  60
PEPQEKPQAL TLTQLLAKFN ALSDHKRKNN ACDLYDFPDT KGLSREDLRR HVEDLDSHLV  120
GIKQRKLSLR RGNSKNPKQK ETETEEEDRV SDRLGFGHVV FGGYHETAMG SCAVSRDVGV  180
SDSSLLDPFT SGSDYFPADD FGVCANDDGA WDLSWMDLDF SSTLFPAGYD PLLGATDEYQ  240
TLVTI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g048440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010470829.11e-142PREDICTED: agamous-like MADS-box protein AGL49
TrEMBLD7KXG17e-87D7KXG1_ARALL; Uncharacterized protein
STRINGXP_010470829.11e-142(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11232928
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60040.12e-34AGAMOUS-like 49