PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g050960.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

M-type_MADS

Protein Properties

Length: 213aa MW: 23766.1 Da PI: 4.2175

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g050960.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	45.6	9.3e-15	13	51	2	40
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40 ++e k r vtfskRr+g++ KA EL+ L da++a++ Csa09g050960.1 13 KVEGKKPRAVTFSKRRKGLFSKAAELCLLSDAQIAILAT 51 6788999*****************************863 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-12	1	67	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	14.577	4	49	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.14E-21	5	83	No hit	No description
PRINTS	PR00404	9.9E-6	6	26	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-15	12	84	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	8.3E-14	14	64	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.9E-6	26	41	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGGLKRKIDT EKKVEGKKPR AVTFSKRRKG LFSKAAELCL LSDAQIAILA TPVSSNSHNS 60 FYTFGHSSVD SVVAAFLAGQ TPTRDDVLDD DEKLGFWWED ESLANSENAE ELGDAIDSMK 120 RMLHDLKELQ RDHQHVLVEK DNNNNNASSF TLRGNDDVGE GCSNFDQIFD SVDDETQSQV 180 MPMINLDDDD FFSSDFFNEI DIDALYYAST NF*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	16	28	KKPRAVTFSKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g050960.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010431144.1	1e-156	PREDICTED: agamous-like MADS-box protein AGL97
Refseq	XP_010431147.1	1e-156	PREDICTED: agamous-like MADS-box protein AGL97
Refseq	XP_010431165.1	1e-156	PREDICTED: agamous-like MADS-box protein AGL97
Swissprot	Q9C633	8e-57	AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBL	R0HI75	1e-57	R0HI75_9BRAS; Uncharacterized protein
STRING	XP_010431144.1	1e-155	(Camelina sativa)
STRING	XP_010431147.1	1e-155	(Camelina sativa)
STRING	XP_010431165.1	1e-155	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM454	17	145

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46408.1	7e-59	AGAMOUS-like 97

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]