PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g053230.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 202aa MW: 22376.2 Da PI: 9.2331

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g053230.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.4e-08	105	144	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A++Y+k L Csa09g053230.1 105 RHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 144 99***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.57	95	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.1E-14	101	154	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.3E-10	101	150	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.8E-6	105	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	7.1E-13	105	153	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.72E-6	118	149	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MDNSDILMNM MMQQMEKLPE HFSNSNPNPN SHNVMMLSES NTHPFFFNPT HTHLPLDPTI 60 SHHHQPGFNF RYAPSMSSSL PERRGGCSDN ANMAAMREMI FRXSRHRRER ISERIRILQR 120 LVPGGTKMDT ASMLDEAIHY VKFLKKQVQS LEEHAVVNGG GMTAVAGGAL AGTVGGGYGG 180 KGCGTMRSDH HQMLGNAQIL R*

Functional Description ? help Back to Top
Source	Description
UniProt	Required for the female reproductive tract development and fertility. {ECO:0000269\|PubMed:17855426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g053230.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by ARF3/ETT in the abaxial gynoecium. {ECO:0000269\|PubMed:17855426}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK175679	1e-128	AK175679.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH037), complete cds, clone: RAFL22-18-N14.
GenBank	AK175912	1e-128	AK175912.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH037), complete cds, clone: RAFL22-57-C09.
GenBank	AK176020	1e-128	AK176020.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH037), complete cds, clone: RAFL22-72-P15.
GenBank	AL132976	1e-128	AL132976.2 Arabidopsis thaliana DNA chromosome 3, BAC clone F11C1.
GenBank	BT010607	1e-128	BT010607.1 Arabidopsis thaliana At3g50330 gene, complete cds.
GenBank	CP002686	1e-128	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010503703.1	1e-106	PREDICTED: transcription factor HEC2
Swissprot	Q9SND4	3e-98	HEC2_ARATH; Transcription factor HEC2
TrEMBL	A0A178VGG7	8e-96	A0A178VGG7_ARATH; HEC2
STRING	XP_010503703.1	1e-105	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1559	27	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50330.1	9e-81	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Zhu L, et al. A Negative Feedback Loop between PHYTOCHROME INTERACTING FACTORs and HECATE Proteins Fine-Tunes Photomorphogenesis in Arabidopsis. Plant Cell, 2016. 28(4): p. 855-74 [PMID:27073231]