PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g053360.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 253aa MW: 26222.1 Da PI: 8.4965

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g053360.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	118.8	2.1e-37	24	82	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++l+cprCds+ntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++P+Ggg+rk k+ Csa09g053360.1 24 TEQLPCPRCDSNNTKFCYYNNYNFSQPRHFCKGCRRYWTHGGTLRDIPIGGGTRKGAKR 82 6899***************************************************8776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-27	4	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.7E-32	25	80	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.696	27	81	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	29	65	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MPTSDSSDSR RIVMKPHGVT APNTEQLPCP RCDSNNTKFC YYNNYNFSQP RHFCKGCRRY 60 WTHGGTLRDI PIGGGTRKGA KRSRTCSSSN SASSVSAVNS VVSSANGVRC VTPVLFPPHS 120 SISNGCTHSV DSDAKGSALS LCGSFTSLLN PNAAATATHG SGSVIGLGGF GIGLGSGFDD 180 VSFGLGRAMW PFSTVNDAGT TNVGSNGGHH AVPMPATWQF EGVESNVGGG FVSGEYFAWP 240 DLSITTPGNS LK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. Enhances the DNA binding of OBF transcription factors to OCS elements.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g053360.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin and salicylic acid (SA). {ECO:0000269\|PubMed:10758484}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010426587.1	0.0	PREDICTED: dof zinc finger protein DOF3.4-like
Swissprot	Q39088	1e-122	DOF34_ARATH; Dof zinc finger protein DOF3.4
TrEMBL	R0FTS8	1e-136	R0FTS8_9BRAS; Uncharacterized protein
STRING	XP_010426587.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2286	28	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50410.1	1e-122	OBF binding protein 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]