PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g053640.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 111aa MW: 12609.8 Da PI: 5.6525

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g053640.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	87.7	1.5e-27	4	100	3	99
DUF260 3 aaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97 +aCk r kC ++Cv+apy+pa++p+k+a + +F s++ ++l +++++ r++ ++sl+ Aear+rdPv G +g++l+lq+ql+ lk+el+ + Csa09g053640.1 4 CACKDVRHKCIEECVFAPYLPANNPEKYATLSTVFDISKLARYLMDIEPSLRQTCVDSLCLDAEARLRDPVMGITGLVLHLQRQLHDLKVELKIA 98 59******************************************************************************************998 PP DUF260 98 ke 99 k+ Csa09g053640.1 99 KR 100 75 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	18.23	1	102	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.2E-27	5	99	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MELCACKDVR HKCIEECVFA PYLPANNPEK YATLSTVFDI SKLARYLMDI EPSLRQTCVD 60 SLCLDAEARL RDPVMGITGL VLHLQRQLHD LKVELKIAKR VLYDDFTIEP *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-24	5	98	14	107	LOB family transfactor Ramosa2.1
5ly0_B	3e-24	5	98	14	107	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g053640.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019101899.1	9e-48	PREDICTED: LOB domain-containing protein 6-like
TrEMBL	R0FR77	6e-40	R0FR77_9BRAS; Uncharacterized protein
STRING	Bostr.6864s0195.1.p	8e-51	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM131	28	340

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63090.4	1e-26	LBD family protein