PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g061470.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 244aa    MW: 28621.9 Da    PI: 6.5196
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g061470.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.56.4e-181158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W +eEde+lv+ v+ lG ++W++ a   g++R++k+c++rw +yl
   Csa09g061470.1 11 RGPWHEEEDERLVKIVTILGERRWDSLATVSGLKRSGKSCRLRWMNYL 58
                     89********************************************97 PP
2Myb_DNA-binding482.8e-1565108247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      g+++ eE   ++++++++G++ W++Iar+++ gRt++++k++w+++
   Csa09g061470.1  65 GPMSSEEVRNILQLHALWGNK-WSKIARRLP-GRTDNEIKNYWRTH 108
                      789******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.608658IPR017930Myb domain
SuperFamilySSF466896.5E-279105IPR009057Homeodomain-like
SMARTSM007175.7E-131060IPR001005SANT/Myb domain
PfamPF002492.7E-141158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-201265IPR009057Homeodomain-like
CDDcd001677.66E-81358No hitNo description
PROSITE profilePS5129425.65359113IPR017930Myb domain
SMARTSM007175.0E-1563111IPR001005SANT/Myb domain
PfamPF002498.5E-1465108IPR001005SANT/Myb domain
CDDcd001674.78E-966109No hitNo description
Gene3DG3DSA:1.10.10.609.1E-2366112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MECKKQETLR RGPWHEEEDE RLVKIVTILG ERRWDSLATV SGLKRSGKSC RLRWMNYLNP  60
KLKHGPMSSE EVRNILQLHA LWGNKWSKIA RRLPGRTDNE IKNYWRTHFR KKEEAQNCDK  120
IIDWRCNKGE ELFHKYKETE IMRTKVTSQE HGFDETVKES NQRTMESGQE TNGGICETES  180
FGIMNSPYEN RISDWISEIS TDQSEANVSE GNSSSSSENN INIASWWFQE TRDFEEFSCS  240
LWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A8e-2691122104MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g061470.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1172561e-153AK117256.1 Arabidopsis thaliana At3g53200 mRNA for putative transcription factor (MYB27), complete cds, clone: RAFL16-81-D10.
GenBankAY5195991e-153AY519599.1 Arabidopsis thaliana MYB transcription factor (At3g53200) mRNA, complete cds.
GenBankBT0052571e-153BT005257.1 Arabidopsis thaliana At3g53200 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426956.11e-180PREDICTED: myb-related protein 315-like
SwissprotQ9SCP11e-138MYB27_ARATH; Transcription factor MYB27
TrEMBLR0FT621e-156R0FT62_9BRAS; Uncharacterized protein
STRINGXP_010426956.11e-179(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM113972533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53200.11e-126myb domain protein 27
Publications ? help Back to Top
  1. Albert NW, et al.
    A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots.
    Plant Cell, 2014. 26(3): p. 962-80
    [PMID:24642943]