PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g061650.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YB
Protein Properties Length: 254aa    MW: 28043.9 Da    PI: 9.0659
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g061650.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB183.12.2e-57104200197
           NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyreleg 95 
                     vreqdrflPian+srimk+ lP n+ki+kdaket+qecvsefisfvtseasdkcqrekrktingddllwa+atlGfedy+eplkvyl++yre+eg
  Csa09g061650.1 104 VREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLMRYREMEG 198
                     69********************************************************************************************* PP

           NF-YB  96 ek 97 
                     ++
  Csa09g061650.1 199 DT 200
                     97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.4E-54102219IPR009072Histone-fold
SuperFamilySSF471133.42E-40107212IPR009072Histone-fold
PfamPF008085.3E-27110174IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006158.8E-21138156No hitNo description
PROSITE patternPS006850141157IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006158.8E-21157175No hitNo description
PRINTSPR006158.8E-21176194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
VDIVLLSTEK GKKKWTVLIK KNEKALNLRI ADKTRHFSSV GSDQSLSSLL RLLLQSTFLF  60
LSLPLPLFFE FFFRVSEMAE SQTGGGGGGS HESGGDQSPR SLNVREQDRF LPIANISRIM  120
KRGLPLNGKI AKDAKETMQE CVSEFISFVT SEASDKCQRE KRKTINGDDL LWAMATLGFE  180
DYIEPLKVYL MRYREMEGDT KGSGKGGESS GKRDGQPSQV SQFSQLPQQG SFPQGPYGNS  240
QASNMMVQLP GTE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B4e-46104195192Transcription factor HapC (Eurofung)
4g92_B4e-46104195192Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g061650.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1768270.0AK176827.1 Arabidopsis thaliana mRNA for transcription factor NF-Y, CCAAT-binding - like protein, complete cds, clone: RAFL25-38-H16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010426972.11e-127PREDICTED: nuclear transcription factor Y subunit B-10
SwissprotQ67XJ21e-113NFYBA_ARATH; Nuclear transcription factor Y subunit B-10
TrEMBLA0A178VNV11e-111A0A178VNV1_ARATH; NF-YB10
STRINGXP_010426972.11e-127(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53340.11e-100nuclear factor Y, subunit B10
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]