PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g062020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 178aa    MW: 20229.3 Da    PI: 10.1164
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g062020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.0002294116123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC++C++ F +   L  H+r+H
  Csa09g062020.1  94 HKCSICDQIFGTGQALGGHMRKH 116
                     79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.4E-104974IPR007087Zinc finger, C2H2
SuperFamilySSF576672.87E-649116No hitNo description
SMARTSM003550.435072IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.9725077IPR007087Zinc finger, C2H2
PROSITE patternPS0002805272IPR007087Zinc finger, C2H2
SMARTSM003550.01594116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.01694121IPR007087Zinc finger, C2H2
PfamPF139128.6E-1094118IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MKRDRSDYEE SVKHIDIVKS LMMLSQSFVV KQIDVKQSTA GSKTNHNNHF ECKTCNRKFD  60
SFQALGGHRA SHKKPKLSVD QEQVKHRNNE NDMHKCSICD QIFGTGQALG GHMRKHRASM  120
MTEQSVIPSP LVYSRPVLNR CSSSKKILDL NLTPLENDLV FIFGKNLVPQ IDLKLRH*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g062020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936480.0AB493648.1 Arabidopsis thaliana At3g53600 mRNA for hypothetical protein, partial cds, clone: RAAt3g53600.
GenBankAL1329660.0AL132966.1 Arabidopsis thaliana DNA chromosome 3, BAC clone F4P12.
GenBankBT0300440.0BT030044.1 Arabidopsis thaliana At3g53600 mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431330.11e-127PREDICTED: zinc finger protein ZAT11-like
SwissprotQ9SLD43e-77ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLA0A178VMG31e-112A0A178VMG3_ARATH; Uncharacterized protein
TrEMBLD7LUK31e-112D7LUK3_ARALL; Zinc finger family protein
STRINGXP_010431330.11e-127(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53128150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.11e-117C2H2 family protein