PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g064100.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 299aa    MW: 33469.1 Da    PI: 10.1512
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g064100.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.37.4e-1738122186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  v  L+ea+++++   +r+klk+++We+v++++     +++  ++++qCk+k+e+++kry+ + +++ ++     s++p++ +l+
  Csa09g064100.1  38 EWSEGAVSSLLEAYESKWVLRNRAKLKGQDWEDVARHVssraTHTKSPKTQTQCKNKIESMKKRYRSESATAPDG-----SSWPLYPRLD 122
                     5*************************************77666666678899********************996.....57*****998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-2136124No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MENGESNQET PKSLLHHEES PKKPSVSSVV VDRLKRDEWS EGAVSSLLEA YESKWVLRNR  60
AKLKGQDWED VARHVSSRAT HTKSPKTQTQ CKNKIESMKK RYRSESATAP DGSSWPLYPR  120
LDHLLRGTQP QPQPQAVLPL NCSVPLLLLE PPSPAVAHPP QVSYGSNGVG KIPKEDGFKP  180
EDKPGKATEM DTDSSTPVVK TKVRGKKVRR RYKEEKEEIA GSIRWLAEVV MRSERARMET  240
MKEIEKMRAE AEAKRAEMDL KRTEIMANTQ LEIARLFAVA ASSGHNKGVD SSLRIGRN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g064100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0843910.0AY084391.1 Arabidopsis thaliana clone 106702 mRNA, complete sequence.
GenBankAY1400410.0AY140041.1 Arabidopsis thaliana putative protein (At3g54390) mRNA, complete cds.
GenBankBT0063220.0BT006322.1 Arabidopsis thaliana At3g54390 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427137.10.0PREDICTED: trihelix transcription factor ASIL1-like isoform X1
RefseqXP_010431353.20.0PREDICTED: trihelix transcription factor ASIL1-like isoform X2
TrEMBLR0FSP90.0R0FSP9_9BRAS; Uncharacterized protein
STRINGXP_010427137.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM98592533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.11e-140sequence-specific DNA binding transcription factors