PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g068690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 230aa    MW: 26177.7 Da    PI: 5.535
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g068690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.49.6e-2694154259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD y+WrKYGqK +  s+fpr+YYrCt++   +Cp+kk+v+r +edp ++ +tY+++H+++
  Csa09g068690.1  94 DDNYTWRKYGQKGILCSTFPRAYYRCTHQklyKCPAKKQVQRLDEDPYTFRVTYRSTHTCH 154
                     8****************************9999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182903.79E-2391154IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-2492154IPR003657WRKY domain
SMARTSM007743.2E-3093155IPR003657WRKY domain
PROSITE profilePS5081118.99294151IPR003657WRKY domain
PfamPF031067.8E-2394154IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEEIMTMIFN GINLVKELEF SLSSQEPPES DLSNSLGLIS TLFGDANERL TILLAWRNSL  60
PQHEPVRMMD MMMQTEPALT QDHLLRGGWM FPPDDNYTWR KYGQKGILCS TFPRAYYRCT  120
HQKLYKCPAK KQVQRLDEDP YTFRVTYRST HTCHLFTTFP ISSAHTTTTT ANVPAVVNLA  180
EAMIRNMDSV VPLLGEPYFN HHCLVPGDDG DGDTWNSPSQ RYEMSSDPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-1994153968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g068690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019085601.11e-166PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB54e-38WRK55_ARATH; WRKY transcription factor 55
TrEMBLR0HL291e-116R0HL29_9BRAS; Uncharacterized protein
STRINGXP_010516245.11e-145(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.24e-44WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]