PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g069960.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 243aa    MW: 27180.8 Da    PI: 8.2743
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g069960.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.71.1e-06214236223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +Cp+C++ F+++ +L +Hi + H
  Csa09g069960.1 214 VCPKCSRGFRDPKDLLKHIDKdH 236
                     7******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183101.06E-12649No hitNo description
PROSITE profilePS510397.8371059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.3E-101150IPR000058Zinc finger, AN1-type
PfamPF014281.1E-131349IPR000058Zinc finger, AN1-type
SMARTSM001541.6E-51352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.109.3E-991147IPR000058Zinc finger, AN1-type
SuperFamilySSF1183101.23E-793145No hitNo description
PROSITE profilePS510397.79798145IPR000058Zinc finger, AN1-type
PfamPF014283.0E-6101141IPR000058Zinc finger, AN1-type
SMARTSM001540.044101142IPR000058Zinc finger, AN1-type
PROSITE profilePS501579.016213241IPR007087Zinc finger, C2H2
PROSITE patternPS000280215236IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVDYCKQ IDFLPFTCDR CLQVFCLDHR SYMKHDCPKG NRGDVTVVIC  60
PLCAKGVRLN PDEDPNITWE KHVNTDCDPS NYEKTVKKKK CPVPRCRELL TFSNTIKCRD  120
CCIDHCLKHR FGPDHTCSGP KKTESSFSFM GFLSSNSKEA PPPTSSSSSW SSLFSRLGND  180
ISQSFQFASG DDGSSEKTQE RNGKQNRGKV TVDVCPKCSR GFRDPKDLLK HIDKDHRGTS  240
KA*
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g069960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1190960.0AK119096.1 Arabidopsis thaliana At3g57480 mRNA for unknown protein, complete cds, clone: RAFL21-44-N05.
GenBankBT0062230.0BT006223.1 Arabidopsis thaliana At3g57480 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427627.11e-178PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
SwissprotQ9SCM41e-159SAP13_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 13
TrEMBLR0FR491e-154R0FR49_9BRAS; Uncharacterized protein
STRINGXP_010427627.11e-178(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39082754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57480.11e-158C2H2 family protein
Publications ? help Back to Top
  1. Dixit A, et al.
    A stress-associated protein, AtSAP13, from Arabidopsis thaliana provides tolerance to multiple abiotic stresses.
    Plant Cell Environ., 2018. 41(5): p. 1171-1185
    [PMID:29194659]