PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g070900.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 185aa    MW: 21311.9 Da    PI: 4.6992
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g070900.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM348.9e-1164885128
             NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     at   k++ + ++  vg kk+L +y g++p+g+kt W+mhey+ 
  Csa09g070900.1   6 ATVAAKKINA-GKGIVGYKKVLEYYVGERPNGVKTCWLMHEYSS 48 
                     6778899998.8999***************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100513.907168IPR003441NAC domain
SuperFamilySSF1019412.09E-12755IPR003441NAC domain
PfamPF023652.9E-41447IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MEDTNATVAA KKINAGKGIV GYKKVLEYYV GERPNGVKTC WLMHEYSSES SSVDNEKVDH  60
ALIYLTSKGA KKKKADQEEE NEKLKKDEEA VEHLDLHQPD QSQLHDMVHQ QPQYCLLDMI  120
DAWLKTVEEQ HSPEYCLLPA EHQKPQTQPF PYNFPEFISF EQEPVIPEDY EVFVADFIKP  180
HSFQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g070900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431447.11e-108PREDICTED: NAC transcription factor 29-like
TrEMBLA0A384KMI25e-35A0A384KMI2_ARATH; NAC064
TrEMBLQ9LXY75e-35Q9LXY7_ARATH; NAC domain containing protein 64
STRINGXP_010431447.11e-107(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.14e-37NAC domain containing protein 64