PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g071340.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 278aa MW: 30828.8 Da PI: 4.758

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g071340.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	93	2.2e-29	71	129	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + itY +Hnh+ Csa09g071340.1 71 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPSKLMITYACDHNHP 129 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.0E-30	62	131	IPR003657	WRKY domain
PROSITE profile	PS50811	31.502	65	131	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-25	66	131	IPR003657	WRKY domain
SMART	SM00774	6.4E-34	70	130	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	72	129	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 278 aa Download sequence Send to blast
MHRRGAIQES DDEEDETYND VVPESPSSCE DTKISKPTPK KSRRNVEKRV VSVPIADVEG 60 SKSRGEVYPP SDSWAWRKYG QKPIKGSPYP RGYYRCSSSK GCPARKQVER SRVDPSKLMI 120 TYACDHNHPF PSSAANNKSH HHRSSVVLKT AKKEEEYEEE EEEEEELTVA ATEEPPVGLD 180 LSHVDSPLLL GGCYSEIGEF GWFYDASISS SSGGSSNFLD VTLERGFSVS GEEDESLFGD 240 LGDLPDCASV FRRGTVSTEE QHRRCDFGAI PFCDSSR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	2e-20	48	132	6	80	Disease resistance protein RRS1
5w3x_D	2e-20	48	132	6	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g071340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY084233	0.0	AY084233.1 Arabidopsis thaliana clone 100465 mRNA, complete sequence.
GenBank	BT029470	0.0	BT029470.1 Arabidopsis thaliana At3g58710 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010427779.1	0.0	PREDICTED: probable WRKY transcription factor 69
Swissprot	Q93WV5	1e-173	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A178V7K8	1e-173	A0A178V7K8_ARATH; WRKY69
STRING	XP_010427779.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12478	19	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.1	1e-166	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]