PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g071410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MIKC_MADS
Protein Properties Length: 253aa    MW: 28748.4 Da    PI: 9.3974
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g071410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.65.2e-312978150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva++ifs++g+lyey+
  Csa09g071410.1 29 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYA 78
                    79***********************************************8 PP
2K-box115.55e-381001937100
           K-box   7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      s++ea+++++qqe++kL+++i+ +q+++Rh++Ge+L+sL++keL++Le +Lek+++++RskKn++l+++ie++qk+e elq++n++Lr+k++e
  Csa09g071410.1 100 PSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNDMLVAEIEYMQKREMELQHDNMYLRAKIAE 193
                     45899**************************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.1E-402180IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.3892181IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.09E-322293IPR002100Transcription factor, MADS-box
CDDcd002658.14E-442295No hitNo description
PROSITE patternPS0035002377IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-322343IPR002100Transcription factor, MADS-box
PfamPF003193.4E-263077IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-324358IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-325879IPR002100Transcription factor, MADS-box
PfamPF014861.1E-27105191IPR002487Transcription factor, K-box
PROSITE profilePS5129715.081107197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MIGGSMEEGG SSHEADNSKK IGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD  60
AEVALVIFST RGRLYEYANN SVRGTIERYK KACSDAVNPP SVTEANTQYY QQEASKLRRQ  120
IRDIQNSNRH IVGESLGSLN FKELKNLEGR LEKGISRVRS KKNDMLVAEI EYMQKREMEL  180
QHDNMYLRAK IAEGARLNPD QHESSVIQGT TIYESGVSSH QSHHYNRNYI PVNLLEPNQQ  240
FSAQDQTPLQ LV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A6e-202189169MEF2C
5f28_B6e-202189169MEF2C
5f28_C6e-202189169MEF2C
5f28_D6e-202189169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Interacts genetically with TT16/AGL32 in a partially antagonistic manner during flower development. Is essential for the coordination of cell divisions in ovule, seed coat development and endosperm formation (PubMed:27776173). {ECO:0000269|PubMed:27776173}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g071410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5517710.0EU551771.1 Capsella bursa-pastoris SHATTERPROOF1-like protein (SHP1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010427788.10.0PREDICTED: agamous-like MADS-box protein AGL1
SwissprotP293811e-175AGL1_ARATH; Agamous-like MADS-box protein AGL1
TrEMBLA0A1I9LM271e-174A0A1I9LM27_ARATH; K-box region and MADS-box transcription factor family protein
STRINGXP_010427788.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33412350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.11e-158MIKC_MADS family protein
Publications ? help Back to Top
  1. Matalon O, et al.
    Dephosphorylation of the adaptor LAT and phospholipase C-γ by SHP-1 inhibits natural killer cell cytotoxicity.
    Sci Signal, 2016. 9(429): p. ra54
    [PMID:27221712]
  2. Ehlers K, et al.
    The MADS Box Genes ABS, SHP1, and SHP2 Are Essential for the Coordination of Cell Divisions in Ovule and Seed Coat Development and for Endosperm Formation in Arabidopsis thaliana.
    PLoS ONE, 2016. 11(10): p. e0165075
    [PMID:27776173]