PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g072460.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 180aa MW: 19390.8 Da PI: 10.274

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g072460.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.7	1.6e-19	86	151	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ng..........kr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr+++ +g+WvAeIr+ + +g +r r +lg+f taeeAa a+++a+ +l g Csa09g072460.1 86 KKYRGVRQRP-WGKWVAEIRCGRGgRGgggegvcnkgRRgDRLWLGTFNTAEEAALAYDNAAIQLIG 151 59******.******6666445789987765338********************99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PIRSF	PIRSF038123	7.6E-32	1	177	IPR017392	AP2/ERF transcription factor ERF/PTI6
CDD	cd00018	9.36E-25	86	158	No hit	No description
SMART	SM00380	6.4E-32	87	165	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.404	87	159	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.19E-18	87	159	IPR016177	DNA-binding domain
Pfam	PF00847	5.1E-14	87	151	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-27	87	158	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-11	88	99	IPR001471	AP2/ERF domain
PRINTS	PR00367	1.6E-11	125	141	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 180 aa Download sequence Send to blast
MKRIIRISFT DAEATDSSSD EEETENRVGG GGSQTTRRRG KRLVKEIVID PPDSADDKLA 60 VCKTRFKIRI PAEFLATPAA KTKERKKYRG VRQRPWGKWV AEIRCGRGGR GGGGEGVCNK 120 GRRGDRLWLG TFNTAEEAAL AYDNAAIQLI GPNAPTNFGF PAENQEVVGG GVSDVARGA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-16	84	172	11	81	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	107	113	GGRGGGG

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g072460.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010427931.1	1e-127	PREDICTED: ethylene-responsive transcription factor ERF070-like
Swissprot	Q9C995	3e-81	ERF70_ARATH; Ethylene-responsive transcription factor ERF070
TrEMBL	A0A178WNZ8	8e-79	A0A178WNZ8_ARATH; CRF8
STRING	XP_010427931.1	1e-126	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4000	23	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G71130.1	5e-47	ERF family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]