PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g075950.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 257aa    MW: 28515.7 Da    PI: 4.8828
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g075950.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.77.7e-2075126156
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                     s+y+G+r+++ +grW+AeIrdp++     r++lg+f tae+Aa+a++  +k+++g+
  Csa09g075950.1  75 SRYRGIRRRP-WGRWAAEIRDPTK---GVRVWLGTFNTAEDAARAYDLEAKRIRGA 126
                     79********.**********964...4*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.63E-2275134IPR016177DNA-binding domain
PfamPF008478.8E-1375125IPR001471AP2/ERF domain
CDDcd000184.33E-3275134No hitNo description
Gene3DG3DSA:3.30.730.103.4E-3176134IPR001471AP2/ERF domain
SMARTSM003803.7E-3776139IPR001471AP2/ERF domain
PROSITE profilePS5103224.26376133IPR001471AP2/ERF domain
PRINTSPR003672.9E-117788IPR001471AP2/ERF domain
PRINTSPR003672.9E-1199115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MCGGAVISDY ITPSSEFDQE KIGRGKKSSW TSKAVFDCSI DDFNGDFEEF ESDFSSTRKR  60
ASSGSALDGT KKQSSRYRGI RRRPWGRWAA EIRDPTKGVR VWLGTFNTAE DAARAYDLEA  120
KRIRGAKAKL NFPNEPSKKR IVEAKTVQLI QEKKNHEADI GLAVASSVPS SSHVDFLWDE  180
NNADTLLIDT QWLRDVIMGD AKKKQELNDG EEEGNVNAAL LSEELLAFEN QTECFSQIPF  240
IEGNCDSLTS LSSQSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2277133360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g075950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428119.20.0PREDICTED: LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF073-like
SwissprotQ8H0T52e-98ERF73_ARATH; Ethylene-responsive transcription factor ERF073
TrEMBLR0I0A11e-142R0I0A1_9BRAS; Uncharacterized protein
STRINGXP_010428119.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137371625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.21e-102ERF family protein
Publications ? help Back to Top
  1. Yang CY,Huang YC,Ou SL
    ERF73/HRE1 is involved in H2O2 production via hypoxia-inducible Rboh gene expression in hypoxia signaling.
    Protoplasma, 2017. 254(4): p. 1705-1714
    [PMID:27995331]