PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g079840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 101aa    MW: 11606.2 Da    PI: 10.0098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g079840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.65.2e-071255344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT +  + + +a + + ++   +W+ +a+ +  g++ +++k ++
   Csa09g079840.1 12 SWTFDQNKMFERALAIYDKDtpdRWHNVAKAVE-GKSVEEVKRHY 55
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.3E-6961IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-131166IPR009057Homeodomain-like
CDDcd001671.05E-51355No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    Send to blast
MASNSKSSIS SSWTFDQNKM FERALAIYDK DTPDRWHNVA KAVEGKSVEE VKRHYDILVE  60
DLINIETGRV PLPKYKNKTF DSKSRVVNDL NSRMMKNLKI *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-301100192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g079840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0258141e-73AC025814.7 Arabidopsis thaliana chromosome 1 BAC F22H5 genomic sequence, complete sequence.
GenBankAY5195251e-73AY519525.1 Arabidopsis thaliana MYB transcription factor (At1g75250) mRNA, complete cds.
GenBankBT0260911e-73BT026091.1 Arabidopsis thaliana At1g75250 mRNA, complete cds.
GenBankCP0026841e-73CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankDQ3953461e-73DQ395346.1 Arabidopsis thaliana RAD-like protein 6 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428536.12e-68PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1736e-54RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A397YRT99e-52A0A397YRT9_BRACM; Uncharacterized protein
STRINGXP_010428536.16e-68(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-51RAD-like 6