PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g080340.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 469aa MW: 50469.1 Da PI: 9.5248

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g080340.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.6e-05	208	230	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L+ H+ + H Csa09g080340.1 208 ACSQCGEVFPKLESLELHQAVrH 230 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.808	207	235	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	207	230	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	4.09E-19	232	464	No hit	No description
Gene3D	G3DSA:3.90.228.10	5.4E-12	234	464	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence Send to blast
MALLTFLPEN AEPPQKHNPP SSKRKKRENP TDQTQPQKQK PHKPQKSKKP VLPKQPSSWD 60 QIKNLLTCKQ IEGSRVHDPS KNSQPAPSIT TNLSPSKLGS SCSSICSFRD VAHGNTRVVH 120 RADHSPDVAN STAPDSETRL LTRKPGQHGS SSSRSLTSGS TRSNASGSYT SSSTTSFRAM 180 QFRKLSGCYE CHMIVDPSRY PISPRVCACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS 240 GRNIVEIIFK SSWLKKDSPI CQIERILKVH NTQRTIQRFE DCRDAVKARA LQTTRKDARC 300 AADGNELLRF HCTTLTCSLG ARGSSSLCSN LPGCGVCNAI RHGFLGKSAG GGGATATANV 360 GGVRTTASSG RADDLLTCSD DARRVMLVCR VIAGRVKRVD LPAAEGSVTA EKKSPVEDSS 420 AVGVSSSNGV FDSVAVNAGV YSNLEELVVY NPRAILPCFV VIYKVLES*

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence Send to blast

MALLTFLPEN AEPPQKHNPP SSKRKKRENP TDQTQPQKQK PHKPQKSKKP VLPKQPSSWD  60
QIKNLLTCKQ IEGSRVHDPS KNSQPAPSIT TNLSPSKLGS SCSSICSFRD VAHGNTRVVH  120
RADHSPDVAN STAPDSETRL LTRKPGQHGS SSSRSLTSGS TRSNASGSYT SSSTTSFRAM  180
QFRKLSGCYE CHMIVDPSRY PISPRVCACS QCGEVFPKLE SLELHQAVRH AVSELGPEDS  240
GRNIVEIIFK SSWLKKDSPI CQIERILKVH NTQRTIQRFE DCRDAVKARA LQTTRKDARC  300
AADGNELLRF HCTTLTCSLG ARGSSSLCSN LPGCGVCNAI RHGFLGKSAG GGGATATANV  360
GGVRTTASSG RADDLLTCSD DARRVMLVCR VIAGRVKRVD LPAAEGSVTA EKKSPVEDSS  420
AVGVSSSNGV FDSVAVNAGV YSNLEELVVY NPRAILPCFV VIYKVLES*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g080340.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK352975	0.0	AK352975.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-C24.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428604.1	0.0	PREDICTED: uncharacterized protein LOC104713223
TrEMBL	R0HU07	0.0	R0HU07_9BRAS; Uncharacterized protein
STRING	XP_010428604.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1916	28	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	0.0	C2H2-like zinc finger protein