PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g081030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

FAR1

Protein Properties

Length: 210aa MW: 24312.1 Da PI: 8.1405

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g081030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	85.2	1e-26	12	97	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +Y++YAk+vGF + k +s++s+ ++e+++++f C ++g++++++++ ++r++ ++gCka+++vk++ dgkw+v+++++eHnH+l p Csa09g081030.1 12 YYKDYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGSKQQSDDA----INPRPSPKIGCKASMHVKRRPDGKWYVYSFVKEHNHDLLP 97 8**************************************99887....9**********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-24	12	97	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MEFETHEDAY LYYKDYAKSV GFGTAKLSSR RSRASKEFID AKFSCIRYGS KQQSDDAINP 60 RPSPKIGCKA SMHVKRRPDG KWYVYSFVKE HNHDLLPEQA HFFRSHRNNN EPVKLNDGRR 120 KKNSPLADCK HLSAYNDLDF IDGYIRNNHD KGRRLLEVLG AAACHLTKES EEGTTYSVKD 180 FDDDQKYFVD WDEFKCFHHS DQLCAAKVD*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g081030.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC009978	1e-139	AC009978.3 Genomic sequence for Arabidopsis thaliana BAC T23E18 from chromosome I, complete sequence.
GenBank	AC012394	1e-139	AC012394.3 Arabidopsis thaliana chromosome 1 BAC F15M4 genomic sequence, complete sequence.
GenBank	AK221406	1e-139	AK221406.1 Arabidopsis thaliana mRNA for putative phytochrome A signaling protein, complete cds, clone: RAFL25-49-E06.
GenBank	BT010456	1e-139	BT010456.1 Arabidopsis thaliana far-red impaired response protein -related (At1g76320) mRNA, complete cds.
GenBank	CP002684	1e-139	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010428686.1	1e-108	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X2
Refseq	XP_010428687.1	1e-108	PREDICTED: protein FAR1-RELATED SEQUENCE 4-like isoform X1
Swissprot	Q6NQJ7	2e-94	FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBL	R0I6J3	8e-94	R0I6J3_9BRAS; Uncharacterized protein
STRING	XP_010428687.1	1e-107	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76320.2	6e-92	FAR1-related sequence 4

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]