PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g081320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family SBP
Protein Properties Length: 1043aa    MW: 114702 Da    PI: 8.3058
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g081320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP128.42.6e-40136212278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cqv++C++dls ak+yhrrhkvCevhska+++lv +++qrfCqqCsrfh lsefDe+krsCrrrLa+hn+rrrk+q+
  Csa09g081320.1 136 CQVDNCKEDLSIAKDYHRRHKVCEVHSKATKALVGKQMQRFCQQCSRFHLLSEFDEGKRSCRRRLAGHNRRRRKTQP 212
                     **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-33128197IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.086133210IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.66E-37134215IPR004333Transcription factor, SBP-box
PfamPF031101.2E-28136209IPR004333Transcription factor, SBP-box
SuperFamilySSF484036.35E-8842936IPR020683Ankyrin repeat-containing domain
PROSITE profilePS502978.826843946IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.203.1E-6843935IPR020683Ankyrin repeat-containing domain
CDDcd002041.32E-6846939No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1043 aa     Download sequence    Send to blast
MDEVGPQVAA PISFHNPMGK KRDLYNHHQP HWLVPSQQPK NDWNPNTWEW DSQRFEAKQV  60
EAEEPLRLGS SNNNTGGLSY EGGGGERGLD LNLASGFNDF EDTPVAVTSS PPNKKVKSGS  120
PGRGGGGGGG GNSPKCQVDN CKEDLSIAKD YHRRHKVCEV HSKATKALVG KQMQRFCQQC  180
SRFHLLSEFD EGKRSCRRRL AGHNRRRRKT QPEEITSRVV APGNRDGSST NANMDVLALL  240
TALACAQGRN EAKPNVSPGV PQREQLVQIL NKINALPLPM DLVSKLNNIG VLARKSPDQP  300
SAMNPQNGLD GCSSPSTMDL LAVLSSTLGS SAPETIALLS QGGFGNKESN EKTKLTSSDH  360
GATTNLEKRT LEFPSFGGGE RTSSSNHSPS QDSDSRGQDT RSSLSLQLFT SSPEDESRPT  420
VASSTKYYSS ASSNPVDDRS PSSSPVMQEF FPLQTSPESR RSNNYKNTSP SPRTSCMPLE  480
LFGASIRGPA ANPNFNVSRH QSGYASSGSD YSPPSLNSDA QDRTGKIVFK LLGKDPSQLP  540
GTLRTEIYSW LSSIPSEMES YIRPGCVILS VYVAMSASAW EQLEENLQQR VSSLVQDSDF  600
WSNTRFLINT GRQLASYKDG RIRLSKFWRT LNSPELITVS PLAVVAGEET ALTVRGRNLT  660
IDGMSFRCAH MGNYASMEVT GTEHRRTKFD ELNVGSFKVQ SASPVSLGRC FIEVGNGFRG  720
DSFPLIIANA KICKELNRLE DEFHTKDVIE EQAHNLDRPR SREEVLCFLN ELGWLFQRKW  780
TSNIHGESDF SLPRFKFLLI CSVERDYCSL IRTLLDMMVE RNLGEDGLMN KESLDMLAES  840
QLLNRAVKRR NTKMAETLIH YSVNPSTKNF IFLPNIAGPG GITPLHLAAS TSGSDDMIDV  900
LTNDPQEIGL SCWNSLVDAT GQTPFSYASM RNNHSYNSLV ARKLADKRNG QISLNIENGI  960
DQIGLSKRLS SELKRSCNTC ASVALKYRKR VSGSHRFFPT PIIHSMLAVA TVCVCVCVFM  1020
HAFPIVRQGS HFSWGGLDYG SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-29126209184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1844849RAVKRR
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g081320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2429580.0AJ242958.1 Arabidopsis thaliana partial mRNA for SPL1-Related3 protein (SPL1R3 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428722.10.0PREDICTED: squamosa promoter-binding-like protein 16
SwissprotQ700C20.0SPL16_ARATH; Squamosa promoter-binding-like protein 16
TrEMBLD7KTV10.0D7KTV1_ARALL; Uncharacterized protein
STRINGXP_010428722.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39992554
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76580.10.0SBP family protein