PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g082590.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 575aa    MW: 65870.3 Da    PI: 7.8047
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g082590.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix97.21.5e-3037121187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW++ e+laL+++r+em++++r++ lk+plWee+s+km+e g++rs+k+Ckek+en+ k++k++k+g+ ++++++s  +++f++lea
  Csa09g082590.1  37 RWPRPETLALLRIRSEMDKAFRDSTLKAPLWEEISRKMMELGYKRSAKKCKEKFENVYKYHKRTKDGRTGKSEGKS--YRFFEELEA 121
                     8********************************************************************9877776..******985 PP
2trihelix108.83.5e-34396481187
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                     rW+k ev aLi++r+++e +++++  k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke++kkr + +s+tcpyf+qlea
  Csa09g082590.1 396 RWPKTEVEALIRIRKNLEANYQENGTKGPLWEEISAGMRRLGYNRSAKRCKEKWENINKYFKKVKESNKKR-PLDSKTCPYFHQLEA 481
                     8*********************************************************************8.9************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0443496IPR001005SANT/Myb domain
PROSITE profilePS500907.0043694IPR017877Myb-like domain
CDDcd122034.26E-2536101No hitNo description
PfamPF138371.9E-2036121No hitNo description
PROSITE profilePS500907.526389453IPR017877Myb-like domain
SMARTSM007179.2E-4393455IPR001005SANT/Myb domain
CDDcd122033.85E-26395460No hitNo description
Gene3DG3DSA:1.10.10.603.1E-4395452IPR009057Homeodomain-like
PfamPF138377.1E-24395482No hitNo description
SuperFamilySSF466896.22E-5396487IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MSGNSSGPLE SSGGGVGGSG EEEKDMKMEE TGGGGNRWPR PETLALLRIR SEMDKAFRDS  60
TLKAPLWEEI SRKMMELGYK RSAKKCKEKF ENVYKYHKRT KDGRTGKSEG KSYRFFEELE  120
AFETLNSYQH EPDQSHPAKS SAAVATAAIT TSLIPWISSN NPSTEKSSLP LKHQHQVSVQ  180
PITTNPTFLA KQPSATMPFP FYSNNNTTTV SQPPPISNDL MNNVSSLHLF SSSTSSSTAS  240
DEEEDHHQGK RSRKRRKYWK GLFTKLTKEL MEKQEKMQKR FLETLENREK ERISREEAWR  300
VQEIARINRE HETLIHERSN AAAKDAAIIS FLHKISGGQQ QQPQQQNHHK PAQRKQYQSD  360
HSITFESKEP RPILLDTTMK MGNYDTNHSI SPSSSRWPKT EVEALIRIRK NLEANYQENG  420
TKGPLWEEIS AGMRRLGYNR SAKRCKEKWE NINKYFKKVK ESNKKRPLDS KTCPYFHQLE  480
ALYNERNKSG AMPLPLPLMV TPQRQLLLSQ ETQTEFETDQ RDKVGDKEDN EEGESEEDEY  540
DDEEEGEGDN ETSEFETVLK KTSSPMDINN NLFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987KRSAKKCKE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g082590.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0871170.0AY087117.1 Arabidopsis thaliana clone 3190 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428754.10.0PREDICTED: trihelix transcription factor GT-2-like
SwissprotQ391170.0TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLA0A178W7Z20.0A0A178W7Z2_ARATH; GT2
STRINGXP_010428754.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59952847
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.20.0Trihelix family protein