PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g083760.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 153aa    MW: 17272 Da    PI: 10.2559
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g083760.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF22.31.6e-071028220
                    ---SHHHHHHHHHHHHHHH CS
          SRF-TF  2 rienksnrqvtfskRrngi 20
                    rienks rqvtfskRrn +
  Csa09g083760.1 10 RIENKSSRQVTFSKRRNDL 28
                    8***************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006615.376129IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-9129IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-4153IPR002100Transcription factor, MADS-box
PfamPF003198.1E-71029IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MGRRKIEIRR IENKSSRQVT FSKRRNDLID SFRFSVNLPS PLSSSLPPEY STTLPPVTTC  60
PRSSSVMSYN MLMNIKAWIL RKKLGINYLP LKELLKMVQS KLEEPNVDNI SVDFLIFLGT  120
ARDCSVHRTD DGVCEVPSRK GEVAERREPG SG*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the negative regulation of flowering time in both long and short days, probably through the photoperiodic and vernalization pathways. Prevents premature flowering. {ECO:0000269|PubMed:11351076, ECO:0000269|PubMed:14558654, ECO:0000269|PubMed:15695584, ECO:0000269|PubMed:18799658}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g083760.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly repressed by vernalization. Negatively regulated at the chromatin level by VIL1 through the photoperiod and vernalization pathways. Requires EARLY FLOWERING 7 (ELF7) and ELF8 to be expressed. Up-regulated by HUA2. {ECO:0000269|PubMed:11351076, ECO:0000269|PubMed:15520273, ECO:0000269|PubMed:15659097, ECO:0000269|PubMed:17114575}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3126651e-102AF312665.1 Arabidopsis thaliana MADS-box protein AGL27-I (AGL27) mRNA, complete cds.
GenBankAF3428081e-102AF342808.1 Arabidopsis thaliana MADS affecting flowering 1 (MAF1) mRNA, complete cds.
GenBankAK1175771e-102AK117577.1 Arabidopsis thaliana mRNA for (NM_148660) MADS affecting flowering 1(MAF1); protein id: At1g77080.4, supported by cDNA: 92459., supported by cDNA: gi_13649968, supported by cDNA: gi_16580104 [Arabidopsis thaliana] gb|AAK37527.1|AF342808_1 (AF342808) MADS affecting flowering 1 [Arabidopsis thaliana] gb|AAK54440.1| (AY034083) MADS box FLC1-like nuclear protein [Arabidopsis thaliana] gb|AAM67028.1| (AY088709) MADS affecting flowering 1 [Arabidopsis thaliana], complete cds, clone: RAFL17-22-J12.
GenBankAK1752471e-102AK175247.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-67-N06.
GenBankAK1762701e-102AK176270.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL23-17-J21.
GenBankAK2279481e-102AK227948.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL14-50-E05.
GenBankAY0340831e-102AY034083.1 Arabidopsis thaliana MADS box FLC1-like nuclear protein (FK1) mRNA, complete cds.
GenBankAY0887091e-102AY088709.1 Arabidopsis thaliana clone 92459 mRNA, complete sequence.
GenBankBT0045981e-102BT004598.1 Arabidopsis thaliana At1g77080 gene, complete cds.
GenBankKU9368171e-102KU936817.1 Arabidopsis thaliana clone NSF24 flowering locus M splice variant (FLM) mRNA, partial sequence.
GenBankKU9368211e-102KU936821.1 Arabidopsis thaliana clone NSF2 flowering locus M splice variant (FLM) mRNA, partial sequence.
GenBankKU9368241e-102KU936824.1 Arabidopsis thaliana clone NSF1 flowering locus M splice variant (FLM) mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010471874.15e-25PREDICTED: agamous-like MADS-box protein AGL27 isoform X2
RefseqXP_019093941.12e-25PREDICTED: agamous-like MADS-box protein AGL27 isoform X3
SwissprotQ9AT762e-24AGL27_ARATH; Agamous-like MADS-box protein AGL27
TrEMBLA0A1P8ARE32e-22A0A1P8ARE3_ARATH; K-box region and MADS-box transcription factor family protein
STRINGXP_010428773.11e-23(Camelina sativa)
STRINGXP_010471873.19e-24(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77080.52e-17MIKC_MADS family protein
Publications ? help Back to Top
  1. Hwan Lee J,Sook Chung K,Kim SK,Ahn JH
    Post-translational regulation of SHORT VEGETATIVE PHASE as a major mechanism for thermoregulation of flowering.
    Plant Signal Behav, 2014. 9(4): p. e28193
    [PMID:25764420]
  2. Luo M, et al.
    Regulation of flowering time by the histone deacetylase HDA5 in Arabidopsis.
    Plant J., 2015. 82(6): p. 925-36
    [PMID:25922987]
  3. Sureshkumar S,Dent C,Seleznev A,Tasset C,Balasubramanian S
    Nonsense-mediated mRNA decay modulates FLM-dependent thermosensory flowering response in Arabidopsis.
    Nat Plants, 2016. 2(5): p. 16055
    [PMID:27243649]
  4. Lutz U, et al.
    Natural haplotypes of FLM non-coding sequences fine-tune flowering time in ambient spring temperatures in Arabidopsis.
    Elife, 2018.
    [PMID:28294941]
  5. Capovilla G,Symeonidi E,Wu R,Schmid M
    Contribution of major FLM isoforms to temperature-dependent flowering in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(18): p. 5117-5127
    [PMID:29036339]
  6. Ahn CS,Lee DH,Pai HS
    Characterization of Maf1 in Arabidopsis: function under stress conditions and regulation by the TOR signaling pathway.
    Planta, 2019. 249(2): p. 527-542
    [PMID:30293201]