PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g084380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 135aa    MW: 15770.4 Da    PI: 10.6704
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g084380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind51.72.4e-1612102299
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT-.-HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhs.nfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     F  ++y++++d++++++isws++ +sf++++ +ef +k++p+  +   +f+ F+ +L  YgFk+v+   +         eF +++F +++  ll+
  Csa09g084380.1  12 FYVRIYQVVDDPTTDSIISWSKSYDSFIIWNVREFRRKIMPTCVEFGrSFSWFLSKLRSYGFKRVNGAGQ--------LEFGNEYFVADQPGLLK 98 
                     8889**************************************88865167889************99885........6************9999 PP

                     XXXX CS
    HSF_DNA-bind  96 kikr 99 
                     ++  
  Csa09g084380.1  99 YMMN 102
                     8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467855.03E-198100IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.8E-208103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.0E-199100IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-1512100IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-71235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.0E-76476IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MVHKFPRGLS PFYVRIYQVV DDPTTDSIIS WSKSYDSFII WNVREFRRKI MPTCVEFGRS  60
FSWFLSKLRS YGFKRVNGAG QLEFGNEYFV ADQPGLLKYM MNEALTAKRK AKMAKAKARR  120
DRVQVEGLFK HLQI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g084380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010428835.15e-97PREDICTED: heat stress transcription factor A-4a-like
TrEMBLR0GJE44e-49R0GJE4_9BRAS; Uncharacterized protein
STRINGXP_010428835.12e-96(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38391457
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77570.14e-34Winged helix-turn-helix transcription repressor DNA-binding