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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa09g085630.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
| Family |
BBR-BPC |
| Protein Properties |
Length: 298aa MW: 33273.9 Da PI: 9.7214 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa09g085630.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 333.9 | 4.4e-102 | 1 | 297 | 1 | 301 |
GAGA_bind 1 mdddgsre..rnkg.yye................paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalve 76
m++ g+++ r+k+ y + ++++l +++++ms++aerda+i+ern+a+s+kk+a+a+rd+a++qrdkal+er+kal+e
Csa09g085630.1 1 MENGGQYDngRFKPdYLKgaqsmwnmmpqhqikeQHNALV--MNKKIMSILAERDAAIHERNQAVSAKKEAIAARDEALQQRDKALSERDKALIE 93
8889998888999967779999999998777754446666..99*************************************************** PP
GAGA_bind 77 rdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkks 171
rdn+++al+++ensl++al sg k d +d++v+ e +kl+++p++ ++e++ +++k +r+k+ k + + k kk +
Csa09g085630.1 94 RDNAYAALQHHENSLNFAL-------SGGKRGDD---------GDDCVG-VEPHKLTVFPLSAIPPEVTSTTTKV-AKRKKESK-QGQVKMKKVG 169
*************976655.......67776662.........577888.88999*******9999988776655.33333333.3344788889 PP
GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafk 266
e+ +++v++++ ++s+++++s+d++ln v++De+t+PvP+C+CtG+ rqCYkWGnGGWqS+CCttt+S yPLP+++++r++R++grKmS+++f+
Csa09g085630.1 170 EDLNRRVAAPG--KKSRKDWDSLDVGLNLVTFDETTMPVPMCTCTGSARQCYKWGNGGWQSSCCTTTLSEYPLPQMPNKRHSRMGGRKMSGNVFS 262
9**********..56******************************************************************************** PP
GAGA_bind 267 klLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
+lL++LaaeGydls+pvDLkd+WA+HGtn+++ti+
Csa09g085630.1 263 RLLSRLAAEGYDLSCPVDLKDYWARHGTNRYITIK 297
**********************************8 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 298 aa
Download sequence Send
to blast |
MENGGQYDNG RFKPDYLKGA QSMWNMMPQH QIKEQHNALV MNKKIMSILA ERDAAIHERN 60
QAVSAKKEAI AARDEALQQR DKALSERDKA LIERDNAYAA LQHHENSLNF ALSGGKRGDD 120
GDDCVGVEPH KLTVFPLSAI PPEVTSTTTK VAKRKKESKQ GQVKMKKVGE DLNRRVAAPG 180
KKSRKDWDSL DVGLNLVTFD ETTMPVPMCT CTGSARQCYK WGNGGWQSSC CTTTLSEYPL 240
PQMPNKRHSR MGGRKMSGNV FSRLLSRLAA EGYDLSCPVD LKDYWARHGT NRYITIK*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK229090 | 0.0 | AK229090.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-37-J01. |
| GenBank | AK317165 | 0.0 | AK317165.1 Arabidopsis thaliana AT2G21240 mRNA, complete cds, clone: RAFL21-54-A06. |
| GenBank | AY084554 | 0.0 | AY084554.1 Arabidopsis thaliana clone 111536 mRNA, complete sequence. |
| GenBank | BT026109 | 0.0 | BT026109.1 Arabidopsis thaliana At2g21240 mRNA, complete cds. |
