PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa09g088420.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 255aa MW: 28083.6 Da PI: 8.974

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa09g088420.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.5	8.7e-12	150	195	5	55
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+ + K +Ka++L + ++Y+k Lq Csa09g088420.1 150 HSIAERLRRERIAERMKALQELVPNgN------KTDKASMLDEIIDYVKFLQ 195 99*********************55......****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.77E-14	143	199	No hit	No description
SuperFamily	SSF47459	2.49E-17	143	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.409	145	194	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.8E-17	147	204	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.8E-9	150	195	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.0E-14	151	200	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MMNSSLLTPS SSSSHIQTPA TTTFDHEDFL DQIFSSAPWP SVVDDAHPPL PSDSFHGHDV 60 DSRNQQIMMM PLNDGSSVHA LYNGFSASGS LPNFHIPHGS GGGLMNQERQ TQTPSQPQAS 120 ASTATGGTVA APLQSRTKVR ARRGQATDPH SIAERLRRER IAERMKALQE LVPNGNKTDK 180 ASMLDEIIDY VKFLQLQVKV LSMSRLGGAA SVSSQISEVF QFTISTLFFF LFSFFVISNK 240 HFRQWIKLRN YTVN*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	154	159	RLRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa09g088420.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176370	0.0	AK176370.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-07-J21.
GenBank	AK176390	0.0	AK176390.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH066), complete cds, clone: RAFL24-10-C06.
GenBank	BT026512	0.0	BT026512.1 Arabidopsis thaliana At2g24260 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010429396.1	1e-160	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	1e-127	BH066_ARATH; Transcription factor bHLH66
TrEMBL	R0HCZ6	1e-136	R0HCZ6_9BRAS; Uncharacterized protein
STRING	XP_010429396.1	1e-159	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3042	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-106	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]