PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g094380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 238aa    MW: 26351.9 Da    PI: 9.6503
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g094380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-2097146255
             AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     g+ GVr ++ +grW AeIrd       r r++lg+f+taeeAa+a++aa+++l+g
  Csa09g094380.1  97 GFMGVRKRP-WGRWSAEIRDrI----GRCRHWLGTFDTAEEAARAYDAAARRLRG 146
                     789******.**********32....25*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.5E-3097162IPR001471AP2/ERF domain
PfamPF008476.6E-1497146IPR001471AP2/ERF domain
PROSITE profilePS5103221.37797154IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2097154IPR016177DNA-binding domain
CDDcd000181.84E-1398153No hitNo description
PRINTSPR003672.8E-998109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-2798153IPR001471AP2/ERF domain
PRINTSPR003672.8E-9120136IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MENTVDLCSI LETETLFSDV MMAAKEPFNG ATSFDISSLF SPNPNQELEN SRRVMDDSIA  60
AVVGENVLFG DNNKVPATEV QDGGVKPWRK VPQKNGGFMG VRKRPWGRWS AEIRDRIGRC  120
RHWLGTFDTA EEAARAYDAA ARRLRGTKAK TNFVIPPLFP EEIAAQTQSS TTEENRRRKK  180
KKRVNARKCV KVTSVAQLFG DANIITSSTS HPNVTSSFNN LDKMGLELDL KLSLGLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1789153671Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174181NRRRKKKK
2176182RRKKKKR
3177182RKKKKR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g094380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431654.11e-177PREDICTED: ethylene-responsive transcription factor ERF084-like
SwissprotQ9M8M53e-76ERF84_ARATH; Ethylene-responsive transcription factor ERF084
TrEMBLA0A078HPH53e-95A0A078HPH5_BRANA; BnaC02g22960D protein
TrEMBLR0I8Z91e-95R0I8Z9_9BRAS; Uncharacterized protein
STRINGXP_010431654.11e-176(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80580.14e-77ERF family protein