PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g094540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 204aa    MW: 22815.3 Da    PI: 7.4999
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g094540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.53.8e-116100395
                     EE-..-HHHHTT-EE--HHH.HTT.....---.....--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   3 kvltpsdvlksgrlvlpkkfaeeh.....ggkke...esktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     k+l  sdv+  g l lp k +++          +   +++++ + d +  s++v+l  r ++++y + +GWk+ v+ + Lk+gD + ++ dg ++
  Csa09g094540.1   6 KILNDSDVSVMGHLDLPTKSTRKLleemkT---TilrNGIEVEILDNNDISYRVTL--REYQEAYPMVNGWKNIVDKKSLKSGDLIELYWDG-TK 94 
                     7888899999999********999985442...3555899****************..*******************************655.78 PP

                     E..EEE CS
              B3  90 felvvk 95 
                     f lvv 
  Csa09g094540.1  95 FILVVD 100
                     877776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.16E-14498IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.0E-64105IPR003340B3 DNA binding domain
CDDcd100179.91E-134102No hitNo description
PfamPF023623.5E-85100IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.109.3E-10694IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF552983.46E-8153194IPR013813Endoribonuclease L-PSP/chorismate mutase-like
Gene3DG3DSA:3.30.1330.408.1E-13155194IPR013813Endoribonuclease L-PSP/chorismate mutase-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MIQILKILND SDVSVMGHLD LPTKSTRKLL EEMKTTILRN GIEVEILDNN DISYRVTLRE  60
YQEAYPMVNG WKNIVDKKSL KSGDLIELYW DGTKFILVVD GFAVVNETYV KFITQEKCPF  120
GVTSRSTIEL PLVKAGLGKA YVEVLVASDE SKRVLHVQSI SCWAPSCIGP YSQATLHKSV  180
VHMAGQLGLD PSHDESSKRR RNC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g094540.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2270771e-129AK227077.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL09-67-D23.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08985.11e-18B3 family protein