PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa09g095380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 196aa    MW: 21791.2 Da    PI: 5.2799
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa09g095380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.61.2e-111341331
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLC 31
                    i+nks ++v f+kRrng++ KA+EL+ L 
  Csa09g095380.1 13 IQNKSAKTVAFTKRRNGLFRKASELCRLS 41
                    99************************885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002661.18E-15363No hitNo description
PROSITE profilePS5006612.839340IPR002100Transcription factor, MADS-box
SMARTSM004322.5E-5364IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-7525IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.55E-13579IPR002100Transcription factor, MADS-box
PfamPF003196.8E-111354IPR002100Transcription factor, MADS-box
PRINTSPR004043.4E-72540IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGGKKHKIDI VEIQNKSAKT VAFTKRRNGL FRKASELCRL SPNSQIAILA TPLSSNSHAS  60
FYSFGHSSVD QVVSSVLQDQ HPLSANQLQN RSGLGFNWWE DKGFDMSENV DELREAVDAV  120
SRMLNNARVR LDDAVKSNQI DGRLMICNDE TKTTTNQNHI LEGESSGSAS TLLVNEEDNL  180
HFDDFFTDFN IDPLM*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa09g095380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431665.11e-144PREDICTED: agamous-like MADS-box protein AGL97
SwissprotQ9C6339e-38AGL97_ARATH; Agamous-like MADS-box protein AGL97
TrEMBLR0GEX72e-88R0GEX7_9BRAS; Uncharacterized protein
STRINGXP_010431665.11e-143(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45417145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60920.13e-72AGAMOUS-like 55
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]